Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083640.1.1 | Tomato | nucleus | 96.34 | 75.14 |
| GSMUA_Achr11P... | Banana | nucleus | 42.49 | 49.79 |
| PGSC0003DMT400068224 | Potato | nucleus | 57.51 | 47.43 |
| KRH67839 | Soybean | endoplasmic reticulum, nucleus | 51.28 | 44.59 |
| KRG96125 | Soybean | nucleus | 50.55 | 43.95 |
| VIT_08s0007g03950.t01 | Wine grape | nucleus | 49.08 | 34.9 |
| PGSC0003DMT400092352 | Potato | cytosol | 17.58 | 34.78 |
| PGSC0003DMT400053361 | Potato | nucleus | 24.54 | 8.8 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | UniProt:M1CQQ0 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 |
| EnsemblPlantsGene:PGSC0003DMG400028265 | PGSC:PGSC0003DMG400028265 | EnsemblPlants:PGSC0003DMT400072640 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 |
| PANTHER:PTHR12620 | PANTHER:PTHR12620:SF17 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00361 |
| SUPFAM:SSF54928 | InterPro:U2AF_small | UniParc:UPI000296ED9F | InterPro:Znf_CCCH | SEG:seg | : |
Description
U2 snrnp auxiliary factor, small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400028265]
Coordinates
chr10:+:55512395..55515132
Molecular Weight (calculated)
31664.0 Da
IEP (calculated)
9.614
GRAVY (calculated)
-1.610
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDFYEDLFE ELSKYGEIEN LNICDNLADH MVGNVYVQFR EEDHAASALQ NLTGRFYAGR PIIVDFSPVT DFREATCRQY EENVCNRGGY CNFMHLKKIS
101: RELRRQLFGK SSRRRRSHSR SRSPRGNRNY EEPRPQGGRG FGRRGGGGGG DRYHDRGRRP RSRSPGRRSG QSRSPGGRRN RSPNREGSEE RRAKIDQWNR
201: EKEETGSGRN HGGGTRREDR EGSAERRAKI DQWNREKEEA DSAKYDNFDA DNGRNDGGDH YGEQFDDDYP KQQ
101: RELRRQLFGK SSRRRRSHSR SRSPRGNRNY EEPRPQGGRG FGRRGGGGGG DRYHDRGRRP RSRSPGRRSG QSRSPGGRRN RSPNREGSEE RRAKIDQWNR
201: EKEETGSGRN HGGGTRREDR EGSAERRAKI DQWNREKEEA DSAKYDNFDA DNGRNDGGDH YGEQFDDDYP KQQ
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.