Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 73.91 | 43.78 |
| PGSC0003DMT400068224 | Potato | nucleus | 78.99 | 32.93 |
| VIT_08s0007g03950.t01 | Wine grape | nucleus | 75.36 | 27.08 |
| PGSC0003DMT400072640 | Potato | nucleus | 34.78 | 17.58 |
| PGSC0003DMT400053361 | Potato | nucleus | 34.78 | 6.31 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | UniProt:M1DPM6 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400041923 |
| PGSC:PGSC0003DMG400041923 | EnsemblPlants:PGSC0003DMT400092352 | PRINTS:PR01848 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 |
| PANTHER:PTHR12620:SF17 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00361 | SUPFAM:SSF54928 |
| InterPro:U2AF_small | UniParc:UPI0002968CF3 | InterPro:Znf_CCCH | SEG:seg | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400041923]
Coordinates
chr1:+:7158713..7159703
Molecular Weight (calculated)
15845.0 Da
IEP (calculated)
4.933
GRAVY (calculated)
-0.187
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEHLASIFG AEKDSVNCPF YFKIGACRHG DRGSRLHTKP SISPTLLLPN MYQRPDVLTR IDPLIMQQHF EDFYEDLFEE LNNYGEIENL NICDNIVDHM
101: VGNVYVQFRE EEQAAKALKI FTGRLYAGNI FSALILSL
101: VGNVYVQFRE EEQAAKALKI FTGRLYAGNI FSALILSL
1: MVEHLASIYG TEKDRVNCPF YFKIGVCRNG DRCSRLYTKP SISPTLLLSN TYQQGRLKQF LDPVQSREKD PKKKF
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:UniProtKB/TrEMBL;Acc:Q3EAP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.