Factsheet for PGSC0003DMT400053361

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103090.2.1	Tomato	nucleus	72.93	70.7
KRH13511	Soybean	nucleus	30.62	56.97
HORVU5Hr1G103280.3	Barley	cytosol	31.01	42.68
KRH43656	Soybean	nucleus	33.11	42.07
Bra018446.1-P	Field mustard	nucleus	37.84	38.55
CDY20942	Canola	nucleus	37.84	38.2
AT1G10320.1	Thale cress	nucleus	37.71	37.91
TraesCS5A01G423300.2	Wheat	nucleus	37.19	37.48
TraesCS5D01G431900.1	Wheat	nucleus	36.4	37.13
TraesCS5B01G425300.2	Wheat	nucleus	36.66	37.1
GSMUA_Achr6P12770_001	Banana	nucleus	40.21	36.69
PGSC0003DMT400092352	Potato	cytosol	6.31	34.78
OQU85120	Sorghum	nucleus, plastid	34.03	33.77
Zm00001d016836_P002	Maize	nucleus	33.51	33.6
VIT_12s0035g01790.t01	Wine grape	nucleus	38.37	33.03
PGSC0003DMT400068224	Potato	nucleus	11.56	26.59
Os02t0557500-01	Rice	cytosol, nucleus	13.4	24.82
PGSC0003DMT400072640	Potato	nucleus	8.8	24.54

Protein Annotations

EntrezGene:102605870	MapMan:16.4.4.3	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0089701	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:M1BUV1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	EnsemblPlantsGene:PGSC0003DMG400020705	PGSC:PGSC0003DMG400020705	EnsemblPlants:PGSC0003DMT400053361	PRINTS:PR01848
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SUPFAM:SSF54928	InterPro:U2AF_small	UniParc:UPI0002956400	RefSeq:XP_006349285.1	InterPro:Znf_CCCH
SEG:seg	:	:	:	:	:

Description

U2 snrnp auxiliary factor, small subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400020705]

Coordinates

chr1:-:79851120..79859866

Molecular Weight (calculated)

89138.3 Da

IEP (calculated)

7.057

GRAVY (calculated)

-1.436

Length

761 amino acids

Sequence
(BLAST)

001: MTEPISVEED DKQAPELQRR GEPISAAAEE DQICNNRKEK RKLTKKEKRK QKRKELAEKT RQEEEAKLND PEELRRIQLE EEEEKERLER ERREFKERER
101: LFLEALARKE AQEVEEEERR RVEEEEEKAK QSQVALENEP DGDDEWEYVE DGPPEIIWQG NEIIVKRNKV KVKKKDPDPA ILKEDPNRPT SNPLAPQSEV
201: YADYKNASSL SAQQLLENVA VQTPNFGTEQ DKAHCPFHLK TGACRFGSRC SRVHFYPDKS CTLLMKNMYC GPGFAWEQDE GLEYTDEEVE CSFEEFYEDV
301: HTEFLKFGEI INFKVCRNSS SHLRGNVYVH YKDIDSAVLA YHSINGRYFA SKQITCEFVS VTKWKVAICG EFMKSKLKSC SRGTACNFIH CFRNPGGDYE
401: WADLDKPPPR YWLTKMAALF GYADESVYDR RLERKNSERM LNSYKMLAAD FDRHRYDSRE RRSRSRESRS SRIHYDDYDF HKRTHQERGN RTDKKRCKTL
501: DKKQFEEGTG QHEEETNHHG ENRYHSSDSD WDLSDREKEG VRRHHSTGRR SRNHHNEKMG RQHRNGDIKK RVCGSVSGDD LPEKKRCRDA GSGNRERGSR
601: HRKEDRNTDS SGEWLDETRD RSLHHKKRRS RSRRHNGVPS SPDRWDKRSK SHDSNTTGDW TAAITDKRKP SSDKSVDSDT DYPYHHNEDI GERGRWEPDE
701: GATGTHSKSS KKSVIDDSED HNVESELNDD GDYNGCTTRG SSRSINQKRR GNSDRMDSAK I

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.