Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G425300.2 | Wheat | nucleus | 79.07 | 79.39 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 78.01 | 78.95 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 51.39 | 70.16 |
| KRH13511 | Soybean | nucleus | 30.33 | 55.99 |
| Zm00001d016836_P002 | Maize | nucleus | 54.97 | 54.68 |
| OQU85120 | Sorghum | nucleus, plastid | 50.2 | 49.41 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 26.23 | 48.18 |
| KRH43656 | Soybean | nucleus | 32.98 | 41.57 |
| PGSC0003DMT400053361 | Potato | nucleus | 37.48 | 37.19 |
| Bra018446.1-P | Field mustard | nucleus | 35.89 | 36.28 |
| CDY20942 | Canola | nucleus | 35.89 | 35.94 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 39.6 | 35.85 |
| Solyc01g103090.2.1 | Tomato | nucleus | 35.63 | 34.27 |
| AT1G10320.1 | Thale cress | nucleus | 34.04 | 33.95 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 35.5 | 30.32 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 11.13 | 30.11 |
| TraesCS1A01G397300.1 | Wheat | nucleus | 9.93 | 27.57 |
| TraesCS5A01G267500.1 | Wheat | nucleus | 11.13 | 26.67 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS5A01G423300 | EnsemblPlants:TraesCS5A01G423300.2 |
| InterPro:U2AF_small | InterPro:Znf_CCCH | TIGR:cd12540 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5A:+:609204414..609210559
Molecular Weight (calculated)
85824.9 Da
IEP (calculated)
8.041
GRAVY (calculated)
-1.292
Length
755 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAAGDLPA ASTRSERRKE RKKERRRRAR REAAAAARAA AEALAADPEE GRRLRELEEA EAAASDRARR AFEDAERRWL EKAASRAAEE AAAAAAEEEA
101: RAAEASTRDK YNDEHRDETE DDGEWEYVED GPAEIIWQGN EIILKKKKIK IPKRTEDKPL SQEEERPTSN PLPPQSVPVA SQRREPSLSA RELLEKVAQE
201: TPNFGTEQDK AHCPFYLKTA ACRFGVRCSR VHFYPDKSCT LLMKNMYNGP GLVLEQDEGL EFTDEEIEQS YEEFYEDVHT EFLKFGELVN FKVCRNGSFH
301: LRGNVYVHYK ALDSALLAYN SMNGRYFAGK QITCEFVALT KWKSAICGEY MRSRFKTCSH GVACNFIHCF RNPGGDYEWA DWDNPPPKYW TRKMAALFGP
401: SDDAVFDKAS DTPDFERLHS SDRKRQRSSD DRYISSRHGD GDTHKRHSSR VFSHSKQEQS NHIMKYGHTR DRREPSAANE QRGQEIEDDT GRYCSPMENE
501: RVSQAHKHEE KHRDGHGDGA RGYNGKIKSR KHRSERHESL ESGCSDWPSE FADAGTSRSP SGSKSTNRHN NHKRSRRQSS DDPNLERGYT AAGKSSGKVH
601: IAKSSSRHYV EDDSYGEKGS RRGKSGKHSD RCDDPDDRWL ATNSDVDLDA ETRFPRSSSG VGKGGRNDDA PPDEDDRYQR SSSRSGRSRA KDDKSSSRRK
701: KHHSEIRKTS DSDDGPSDSS DIRDLSLPAW RSRSRSSEEG LSLHKRRKGR RGHDS
101: RAAEASTRDK YNDEHRDETE DDGEWEYVED GPAEIIWQGN EIILKKKKIK IPKRTEDKPL SQEEERPTSN PLPPQSVPVA SQRREPSLSA RELLEKVAQE
201: TPNFGTEQDK AHCPFYLKTA ACRFGVRCSR VHFYPDKSCT LLMKNMYNGP GLVLEQDEGL EFTDEEIEQS YEEFYEDVHT EFLKFGELVN FKVCRNGSFH
301: LRGNVYVHYK ALDSALLAYN SMNGRYFAGK QITCEFVALT KWKSAICGEY MRSRFKTCSH GVACNFIHCF RNPGGDYEWA DWDNPPPKYW TRKMAALFGP
401: SDDAVFDKAS DTPDFERLHS SDRKRQRSSD DRYISSRHGD GDTHKRHSSR VFSHSKQEQS NHIMKYGHTR DRREPSAANE QRGQEIEDDT GRYCSPMENE
501: RVSQAHKHEE KHRDGHGDGA RGYNGKIKSR KHRSERHESL ESGCSDWPSE FADAGTSRSP SGSKSTNRHN NHKRSRRQSS DDPNLERGYT AAGKSSGKVH
601: IAKSSSRHYV EDDSYGEKGS RRGKSGKHSD RCDDPDDRWL ATNSDVDLDA ETRFPRSSSG VGKGGRNDDA PPDEDDRYQR SSSRSGRSRA KDDKSSSRRK
701: KHHSEIRKTS DSDDGPSDSS DIRDLSLPAW RSRSRSSEEG LSLHKRRKGR RGHDS
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
201: RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
301: ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
401: HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
501: RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
601: THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
701: SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD
201: RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA
301: ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI
401: HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL
501: RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK
601: THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE
701: SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.