Factsheet for TraesCS3A01G246800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G122400.1
TraesCS2B01G144600.1
TraesCS4A01G165000.4
TraesCS4A01G171800.3
TraesCS4B01G145600.4
TraesCS4D01G143400.3
TraesCS4D01G150000.4
TraesCS5A01G040700.1
TraesCS5A01G366000.1
TraesCS5B01G041900.1
TraesCS5B01G067400.1
TraesCS5B01G368400.1
TraesCS5D01G071600.1
TraesCS5D01G071700.1
TraesCS5D01G375600.1
TraesCSU01G068100.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42820.1	TraesCS2A01G122400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS2B01G144600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G165000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4A01G171800.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4B01G145600.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G143400.3	AT4G36690.1	21798944
AT5G42820.1	TraesCS4D01G150000.4	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G040700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5A01G366000.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G041900.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G067400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5B01G368400.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G071700.1	AT4G36690.1	21798944
AT5G42820.1	TraesCS5D01G375600.1	AT4G36690.1	21798944
AT5G42820.1	TraesCSU01G068100.3	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244700.1	Wheat	nucleus	93.19	93.19
HORVU3Hr1G061060.2	Barley	nucleus	93.19	92.53
TraesCS3B01G272500.1	Wheat	nucleus	90.68	90.04
GSMUA_Achr11P...	Banana	cytosol	59.86	81.07
Os01t0667800-01	Rice	cytosol	59.86	80.68
OQU87301	Sorghum	nucleus	81.72	79.17
GSMUA_Achr9P12340_001	Banana	cytosol	70.25	77.47
VIT_18s0122g00480.t01	Wine grape	nucleus	74.55	76.47
TraesCS1A01G397300.1	Wheat	nucleus	72.76	74.63
KRG89181	Soybean	nucleus	69.53	72.39
KRH49506	Soybean	nucleus	70.25	72.32
AT5G42820.1	Thale cress	nucleus	71.68	70.67
CDX95151	Canola	nucleus	70.97	70.46
CDY52374	Canola	nucleus	70.97	69.23
Bra027459.1-P	Field mustard	nucleus	71.68	68.73
AT1G27650.1	Thale cress	nucleus	72.04	67.91
Bra010926.1-P	Field mustard	nucleus	68.1	66.43
CDY11775	Canola	nucleus	68.1	65.52
CDY03934	Canola	nucleus	56.99	65.16
CDX90100	Canola	nucleus	66.67	65.03
CDY46291	Canola	nucleus	31.9	63.57
CDY60278	Canola	nucleus	55.2	63.37
CDY21244	Canola	nucleus	36.2	61.59
TraesCS5A01G267500.1	Wheat	nucleus	69.18	61.27
Bra030057.1-P	Field mustard	nucleus	55.91	60.94
TraesCS5A01G423300.2	Wheat	nucleus	30.11	11.13

Protein Annotations

MapMan:16.4.1.2.11.1	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0089701
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PRINTS:PR01848	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR12620	PANTHER:PTHR12620:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00356	SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS3A01G246800
EnsemblPlants:TraesCS3A01G246800.1	InterPro:U2AF_small	InterPro:Znf_CCCH	TIGR:cd12539	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:464896735..464897574

Molecular Weight (calculated)

32593.2 Da

IEP (calculated)

9.851

GRAVY (calculated)

-1.173

Length

279 amino acids

Sequence
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRIHNRP TISPTIVLMN MYQRPDMITP GVDAQGQPID PRKMQEHFED FYEDIFEELS KFGEIETLNV
101: CDNLSDHMIG NVYVQFREED QAAAAHTALQ GRFYSGRLII VDFSPVTDFR EATCRQYEEN TCTRGGHCNF MHVKQIGKDL RKKLFGRYRR SQRGRSRSPS
201: PHHRRERRDR DDYRGRDDFR RGGGGGGRRG GSSRHERHDD GGRRRYGGSP PRRARSPVRE NSEERRAKIE QWNREREAK

Best Arabidopsis Sequence Match ( AT5G42820.2 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV

Arabidopsis Description

U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.