Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G061060.2 | Barley | nucleus | 100.0 | 99.29 |
| TraesCS3A01G246800.1 | Wheat | nucleus | 93.19 | 93.19 |
| TraesCS3B01G272500.1 | Wheat | nucleus | 91.76 | 91.1 |
| GSMUA_Achr11P... | Banana | cytosol | 59.86 | 81.07 |
| OQU87301 | Sorghum | nucleus | 82.8 | 80.21 |
| Os01t0667800-01 | Rice | cytosol | 59.5 | 80.19 |
| GSMUA_Achr9P12340_001 | Banana | cytosol | 69.89 | 77.08 |
| VIT_18s0122g00480.t01 | Wine grape | nucleus | 73.84 | 75.74 |
| KRH49506 | Soybean | nucleus | 70.25 | 72.32 |
| KRG89181 | Soybean | nucleus | 68.82 | 71.64 |
| AT5G42820.1 | Thale cress | nucleus | 70.61 | 69.61 |
| CDX95151 | Canola | nucleus | 69.89 | 69.39 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 72.76 | 69.28 |
| CDY52374 | Canola | nucleus | 69.89 | 68.18 |
| Bra027459.1-P | Field mustard | nucleus | 70.97 | 68.04 |
| AT1G27650.1 | Thale cress | nucleus | 71.68 | 67.57 |
| Bra010926.1-P | Field mustard | nucleus | 68.46 | 66.78 |
| CDX90100 | Canola | nucleus | 67.03 | 65.38 |
| CDY11775 | Canola | nucleus | 67.38 | 64.83 |
| CDY03934 | Canola | nucleus | 55.56 | 63.52 |
| CDY60278 | Canola | nucleus | 55.2 | 63.37 |
| CDY46291 | Canola | nucleus | 31.54 | 62.86 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 69.53 | 62.18 |
| Bra030057.1-P | Field mustard | nucleus | 56.27 | 61.33 |
| CDY21244 | Canola | nucleus | 35.13 | 59.76 |
| TraesCS5D01G431900.1 | Wheat | nucleus | 29.39 | 10.99 |
| TraesCS5D01G432000.1 | Wheat | cytosol | 7.53 | 10.88 |
Protein Annotations
| MapMan:16.4.1.2.11.1 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 | InterPro:IPR000504 |
| InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS3D01G244700 | EnsemblPlants:TraesCS3D01G244700.1 |
| InterPro:U2AF_small | InterPro:Znf_CCCH | TIGR:cd12539 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:-:339860994..339861833
Molecular Weight (calculated)
32623.2 Da
IEP (calculated)
9.851
GRAVY (calculated)
-1.182
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRIHNRP TISPTIVLMN MYQRPDMITP GVDAQGQPID PRKMQEHFED FYEDIFEELS KFGEIETLNV
101: CDNLSDHMIG NVYVQFREED QAAAAHTALQ GRFYSGRLII VDFSPVTDFR EATCRQYEEN TCTRGGHCNF MHVKQIGKDL RKKLFGRYRR SQRGRSRSPS
201: PHHRRERRDR DDYRGRDDFR RGGGGGGRRG GSSRHERHDD GGRRRYGGSP PRRARSPVRE NSEERRAKIE QWNRERETK
101: CDNLSDHMIG NVYVQFREED QAAAAHTALQ GRFYSGRLII VDFSPVTDFR EATCRQYEEN TCTRGGHCNF MHVKQIGKDL RKKLFGRYRR SQRGRSRSPS
201: PHHRRERRDR DDYRGRDDFR RGGGGGGRRG GSSRHERHDD GGRRRYGGSP PRRARSPVRE NSEERRAKIE QWNRERETK
001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
101: CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS
201: RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
Arabidopsis Description
U2AF35BU2AF35B [Source:UniProtKB/TrEMBL;Acc:A0A178UM74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.