Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G067400.1 | Wheat | nucleus | 72.09 | 66.31 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 59.3 | 54.55 |
| AT1G60830.2 | Thale cress | nucleus | 27.33 | 42.34 |
| CDY55407 | Canola | nucleus | 26.16 | 40.18 |
| CDY40492 | Canola | nucleus | 24.42 | 28.0 |
| Bra040973.1-P | Field mustard | nucleus | 26.74 | 16.91 |
| PGSC0003DMT400040069 | Potato | cytosol | 29.07 | 16.08 |
| CDX75589 | Canola | mitochondrion | 30.81 | 14.93 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 33.72 | 12.29 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 4.65 | 11.76 |
| Bra027119.1-P | Field mustard | nucleus | 32.56 | 11.41 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 34.88 | 10.93 |
| CDY40481 | Canola | nucleus | 31.98 | 10.66 |
| Os11t0636900-02 | Rice | nucleus | 35.47 | 10.63 |
| CDY12869 | Canola | nucleus | 30.23 | 10.48 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 34.88 | 10.47 |
| Zm00001d048777_P007 | Maize | nucleus | 35.47 | 10.2 |
| PGSC0003DMT400033041 | Potato | nucleus | 32.56 | 10.07 |
| Solyc02g085570.2.1 | Tomato | nucleus | 32.56 | 10.04 |
| KXG28995 | Sorghum | nucleus | 34.88 | 10.0 |
| Bra040940.1-P | Field mustard | nucleus | 32.56 | 9.96 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 33.14 | 9.9 |
| CDY35472 | Canola | nucleus | 31.4 | 9.82 |
| CDY24773 | Canola | nucleus | 31.4 | 9.75 |
| Bra010569.1-P | Field mustard | nucleus | 31.4 | 9.75 |
| CDY67096 | Canola | mitochondrion | 13.95 | 9.72 |
| CDY66742 | Canola | nucleus | 31.98 | 9.7 |
| Zm00001d007632_P003 | Maize | nucleus | 34.88 | 9.54 |
| CDY30313 | Canola | nucleus | 32.56 | 9.52 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 33.72 | 9.49 |
| AT4G36690.1 | Thale cress | nucleus | 31.4 | 9.42 |
| PGSC0003DMT400000919 | Potato | nucleus | 33.14 | 9.42 |
| VIT_04s0023g01450.t01 | Wine grape | nucleus | 30.81 | 9.38 |
| AT1G60900.1 | Thale cress | nucleus | 31.98 | 9.34 |
| Solyc02g062920.2.1 | Tomato | nucleus | 29.65 | 9.11 |
| CDY46188 | Canola | nucleus | 31.4 | 9.09 |
| Bra031477.1-P | Field mustard | nucleus | 31.4 | 9.09 |
| Solyc12g008750.1.1 | Tomato | nucleus | 31.98 | 9.06 |
| KRH56450 | Soybean | nucleus | 30.81 | 8.76 |
| CDY03767 | Canola | nucleus | 30.81 | 8.73 |
| KRH64800 | Soybean | nucleus | 30.23 | 8.67 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 4.65 | 5.13 |
| Bra031341.1-P | Field mustard | nucleus | 6.4 | 4.38 |
| CDY55589 | Canola | mitochondrion | 6.4 | 4.38 |
| CDY12868 | Canola | mitochondrion | 5.23 | 3.95 |
| Bra010656.1-P | Field mustard | mitochondrion, plastid | 5.23 | 3.56 |
| CDY40493 | Canola | nucleus | 4.65 | 2.85 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G071700.1 | EnsemblPlantsGene:TraesCS5D01G071700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | SEG:seg |
| SUPFAM:SSF54928 | TIGR:cd12232 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:70402332..70403162
Molecular Weight (calculated)
19284.7 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.643
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSFPPADA HSDQHEWTPV VLECKHIRKP DGTPLRLHLH CMPNRPRTNA YQQHPTNTIT TATTTNRPPV PPEAGATKVV RLTKMLSPDN RLEDDDEFED
101: LVEDVIEEAR TFGNLVKVVI PRPSPGSNPA VAGVGKAFLE YACLDSSSHC RRSMDRRWFA GRRIAASFYP EE
101: LVEDVIEEAR TFGNLVKVVI PRPSPGSNPA VAGVGKAFLE YACLDSSSHC RRSMDRRWFA GRRIAASFYP EE
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.