Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 96.8 | 95.42 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 81.98 | 95.27 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 94.77 | 86.93 |
| Zm00001d031725_P001 | Maize | nucleus | 70.93 | 69.71 |
| OQU80770 | Sorghum | nucleus | 72.09 | 69.08 |
| Os08t0544800-01 | Rice | nucleus | 71.8 | 66.22 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.09 | 37.62 |
| TraesCS2D01G049400.1 | Wheat | cytosol | 9.3 | 36.36 |
| CDY27099 | Canola | nucleus | 27.03 | 33.33 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 16.28 | 33.14 |
| AT5G51910.1 | Thale cress | nucleus | 27.91 | 32.76 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 31.69 | 32.15 |
| CDX95656 | Canola | nucleus | 27.33 | 32.08 |
| CDX91612 | Canola | nucleus | 26.74 | 31.94 |
| Bra022568.1-P | Field mustard | cytosol | 27.03 | 31.31 |
| TraesCS2D01G372200.1 | Wheat | plastid | 18.6 | 31.22 |
| Bra000395.1-P | Field mustard | nucleus | 27.91 | 30.87 |
| CDY53888 | Canola | nucleus | 27.91 | 30.87 |
| TraesCS6D01G216100.1 | Wheat | plastid | 18.31 | 30.58 |
| Bra004929.1-P | Field mustard | nucleus | 28.78 | 30.56 |
| KRH35393 | Soybean | nucleus | 27.62 | 30.55 |
| CDX74756 | Canola | nucleus | 28.78 | 30.46 |
| CDY18910 | Canola | nucleus | 28.49 | 30.15 |
| KRH48289 | Soybean | nucleus | 29.36 | 30.15 |
| PGSC0003DMT400094424 | Potato | cytosol | 21.22 | 29.8 |
| KRH65181 | Soybean | nucleus | 29.07 | 29.76 |
| KRG91429 | Soybean | nucleus | 28.2 | 29.75 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 28.2 | 29.04 |
| KRH57263 | Soybean | nucleus | 29.07 | 28.9 |
| KRH03994 | Soybean | nucleus | 28.49 | 28.82 |
| Solyc03g006800.1.1 | Tomato | nucleus | 26.74 | 28.22 |
| AT2G45680.1 | Thale cress | cytosol | 28.78 | 27.81 |
| PGSC0003DMT400088049 | Potato | cytosol | 21.51 | 27.41 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 15.12 | 26.4 |
| PGSC0003DMT400062327 | Potato | nucleus | 27.62 | 25.96 |
| Solyc08g080150.1.1 | Tomato | nucleus | 26.74 | 24.86 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 29.65 | 24.82 |
| PGSC0003DMT400058534 | Potato | nucleus | 26.16 | 24.06 |
| TraesCS4D01G090500.1 | Wheat | nucleus, plastid | 25.29 | 22.6 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 21.8 | 22.32 |
| TraesCS6D01G285600.1 | Wheat | nucleus | 24.13 | 20.7 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 23.55 | 20.25 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G516300.1 | EnsemblPlantsGene:TraesCS5D01G516300 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF19 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5D:+:539014332..539015366
Molecular Weight (calculated)
35937.0 Da
IEP (calculated)
5.747
GRAVY (calculated)
-0.405
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGQDRPL GEGEANAGGV AEPGAMAMVP VPVRGGYMVV PKPEPVELFG AGGGGMVVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS
101: DGETVRWLLQ QSEPAIVAAT GTGTVPAIAT TVDGVLRIPT QSASSAVVDD EASAKRRRKL QPTRAAGPLA TVPPTAAYYS VLADPLLQGG AGSAAISVAS
201: GLAPIGGQQG LVPVFAVPSA AGAAGANHMI PQATAVWMVP QPAGAPNQPT QYWAFQSAPQ LINLAGAQTM PAGAVFPNVA ADYHQQQQSA STVVQNTNSD
301: HHQQQFSHHL TGAESHEQQR RDHHPEEDDA DDDDEPVSDS SPED
101: DGETVRWLLQ QSEPAIVAAT GTGTVPAIAT TVDGVLRIPT QSASSAVVDD EASAKRRRKL QPTRAAGPLA TVPPTAAYYS VLADPLLQGG AGSAAISVAS
201: GLAPIGGQQG LVPVFAVPSA AGAAGANHMI PQATAVWMVP QPAGAPNQPT QYWAFQSAPQ LINLAGAQTM PAGAVFPNVA ADYHQQQQSA STVVQNTNSD
301: HHQQQFSHHL TGAESHEQQR RDHHPEEDDA DDDDEPVSDS SPED
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.