Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094424 | Potato | cytosol | 73.33 | 80.82 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.96 | 30.69 |
| CDX95656 | Canola | nucleus | 31.85 | 29.35 |
| PGSC0003DMT400062327 | Potato | nucleus | 39.63 | 29.23 |
| GSMUA_Achr11P... | Banana | nucleus | 24.07 | 28.76 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 22.96 | 28.18 |
| CDY53888 | Canola | nucleus | 32.22 | 27.97 |
| Bra004929.1-P | Field mustard | nucleus | 33.33 | 27.78 |
| CDX74756 | Canola | nucleus | 33.33 | 27.69 |
| Bra000395.1-P | Field mustard | nucleus | 31.85 | 27.65 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 19.26 | 27.51 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 34.44 | 27.43 |
| CDY18910 | Canola | nucleus | 32.96 | 27.38 |
| KRH65181 | Soybean | nucleus | 32.59 | 26.19 |
| KRH48289 | Soybean | nucleus | 32.22 | 25.97 |
| AT2G45680.1 | Thale cress | cytosol | 34.07 | 25.84 |
| PGSC0003DMT400052203 | Potato | nucleus | 21.48 | 25.0 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 29.26 | 24.84 |
| PGSC0003DMT400055541 | Potato | plastid | 18.15 | 24.38 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 26.3 | 23.99 |
| PGSC0003DMT400058534 | Potato | nucleus | 31.48 | 22.73 |
| Zm00001d031725_P001 | Maize | nucleus | 29.26 | 22.57 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 28.15 | 22.16 |
| OQU80770 | Sorghum | nucleus | 28.89 | 21.73 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 27.41 | 21.51 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 27.41 | 21.2 |
| PGSC0003DMT400090661 | Potato | nucleus | 21.85 | 21.15 |
| Os08t0544800-01 | Rice | nucleus | 28.89 | 20.91 |
| PGSC0003DMT400067150 | Potato | nucleus, plastid | 24.81 | 20.49 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 27.41 | 19.73 |
| PGSC0003DMT400095626 | Potato | plastid | 19.63 | 18.93 |
| Zm00001d006165_P001 | Maize | nucleus | 22.59 | 18.48 |
| EER99208 | Sorghum | nucleus | 22.22 | 18.4 |
| PGSC0003DMT400023981 | Potato | nucleus | 25.56 | 17.74 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 17.41 | 17.22 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 21.48 | 17.16 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 21.11 | 17.07 |
| PGSC0003DMT400001613 | Potato | nucleus | 25.93 | 16.91 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 21.11 | 16.81 |
| PGSC0003DMT400008728 | Potato | nucleus | 22.96 | 16.71 |
| PGSC0003DMT400083148 | Potato | nucleus | 25.19 | 16.59 |
| Os09t0521300-00 | Rice | nucleus | 21.85 | 15.49 |
| PGSC0003DMT400042166 | Potato | cytosol | 23.33 | 14.06 |
| PGSC0003DMT400064164 | Potato | nucleus | 26.67 | 13.48 |
Protein Annotations
| EntrezGene:102590965 | MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 |
| UniProt:M1DF45 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400037620 | PGSC:PGSC0003DMG400037620 | EnsemblPlants:PGSC0003DMT400088049 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000294DE2B | RefSeq:XP_006362708.1 |
| SEG:seg | : | : | : | : | : |
Description
TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400037620]
Coordinates
chr3:-:41666461..41667273
Molecular Weight (calculated)
28827.5 Da
IEP (calculated)
9.619
GRAVY (calculated)
-0.300
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVENKQNI EQEHDDVNQT KVLGVDPLLS DSHESAIAAD SSQEAEKQVV KKSAKYKHTT VEGHGTRVRL SPICAARIFQ LTRELGHKSE GETIKWILER
101: AEPAIIAATG TGTVPAIAVQ VNGTLKVPAT INEGESLMRK RKRASNSEFY DMHKESKFAP VAPITPKGVV PVWPVGNGYY MLPPVAGLHL RASPLINVNA
201: VGASEVKLSS SCVSKCAGNG NKLGDGISVM APSSTSTSPG ATTTTTRGFP LEIFNKKVHQ LMNGFGSTKS
101: AEPAIIAATG TGTVPAIAVQ VNGTLKVPAT INEGESLMRK RKRASNSEFY DMHKESKFAP VAPITPKGVV PVWPVGNGYY MLPPVAGLHL RASPLINVNA
201: VGASEVKLSS SCVSKCAGNG NKLGDGISVM APSSTSTSPG ATTTTTRGFP LEIFNKKVHQ LMNGFGSTKS
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.