Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 59.09 | 57.52 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 55.0 | 38.05 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 34.09 | 37.13 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 28.18 | 32.8 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 48.64 | 31.2 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 18.64 | 24.26 |
| CDX95656 | Canola | nucleus | 32.27 | 24.23 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 36.36 | 23.6 |
| AT5G51910.1 | Thale cress | nucleus | 31.36 | 23.55 |
| CDY53888 | Canola | nucleus | 32.73 | 23.15 |
| Bra000395.1-P | Field mustard | nucleus | 32.73 | 23.15 |
| PGSC0003DMT400088049 | Potato | cytosol | 28.18 | 22.96 |
| PGSC0003DMT400094424 | Potato | cytosol | 25.45 | 22.86 |
| Bra004929.1-P | Field mustard | nucleus | 33.18 | 22.53 |
| CDY18910 | Canola | nucleus | 33.18 | 22.46 |
| CDX74756 | Canola | nucleus | 33.18 | 22.46 |
| CDY27099 | Canola | nucleus | 28.18 | 22.22 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 24.55 | 22.13 |
| KRH35393 | Soybean | nucleus | 30.91 | 21.86 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 20.91 | 21.7 |
| CDX91612 | Canola | nucleus | 28.18 | 21.53 |
| KRG91429 | Soybean | nucleus | 31.82 | 21.47 |
| Solyc03g006800.1.1 | Tomato | nucleus | 31.36 | 21.17 |
| KRH48289 | Soybean | nucleus | 31.82 | 20.9 |
| Bra022568.1-P | Field mustard | cytosol | 28.18 | 20.88 |
| KRH65181 | Soybean | nucleus | 31.36 | 20.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.91 | 20.26 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 21.82 | 20.25 |
| AT2G45680.1 | Thale cress | cytosol | 32.73 | 20.22 |
| GSMUA_Achr10P... | Banana | nucleus | 21.36 | 20.0 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 24.55 | 20.0 |
| PGSC0003DMT400062327 | Potato | nucleus | 33.18 | 19.95 |
| KRH03994 | Soybean | nucleus | 30.45 | 19.71 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 24.09 | 19.49 |
| KRH57263 | Soybean | nucleus | 30.0 | 19.08 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 23.18 | 19.03 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 18.18 | 18.96 |
| Solyc08g080150.1.1 | Tomato | nucleus | 31.36 | 18.65 |
| GSMUA_Achr11P... | Banana | nucleus | 20.45 | 18.07 |
| PGSC0003DMT400058534 | Potato | nucleus | 30.45 | 17.91 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 33.18 | 17.76 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 23.18 | 17.65 |
| GSMUA_Achr11P... | Banana | nucleus | 22.27 | 17.07 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 22.73 | 16.5 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 29.09 | 16.49 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 21.36 | 16.38 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 21.36 | 15.99 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 24.09 | 15.77 |
| GSMUA_Achr6P36470_001 | Banana | nucleus | 24.09 | 13.95 |
| GSMUA_Achr10P... | Banana | nucleus | 21.36 | 11.63 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G27220_001 | EnsemblPlants:GSMUA_Achr4P27220_001 |
| EnsemblPlants:GSMUA_Achr4T27220_001 | InterPro:IPR017887 | UniProt:M0SSI4 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00029625A0 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27220_001]
Coordinates
chr4:+:26150321..26151328
Molecular Weight (calculated)
22120.4 Da
IEP (calculated)
8.712
GRAVY (calculated)
0.091
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT TVGGTLKIPT EAPSSAPVTS TSAAAADDPA ANGEDAAKKR RRKLQPLRSG
101: GGAVVAAGGA TGATSIPPGA LWMVPPSAAV ATAPSSQAQI WTFPPGPQII NLASVQPVSA TGAAGSPAAP DSSDAAPAAA RKPGVSVWDQ RMGHHLLSNS
201: VPAGCPPPTF LIYIYIYIYI
101: GGAVVAAGGA TGATSIPPGA LWMVPPSAAV ATAPSSQAQI WTFPPGPQII NLASVQPVSA TGAAGSPAAP DSSDAAPAAA RKPGVSVWDQ RMGHHLLSNS
201: VPAGCPPPTF LIYIYIYIYI
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.