Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 1
- mitochondrion 1
- cytoskeleton 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 64.14 | 69.18 |
| GSMUA_Achr11P... | Banana | nucleus | 41.98 | 63.72 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 31.2 | 48.64 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 23.32 | 39.6 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 18.37 | 37.28 |
| CDX95656 | Canola | nucleus | 29.45 | 34.47 |
| AT5G51910.1 | Thale cress | nucleus | 28.86 | 33.79 |
| CDY27099 | Canola | nucleus | 27.41 | 33.69 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 18.37 | 33.33 |
| CDY53888 | Canola | nucleus | 29.74 | 32.8 |
| Bra000395.1-P | Field mustard | nucleus | 29.74 | 32.8 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 32.36 | 32.74 |
| Bra004929.1-P | Field mustard | nucleus | 30.9 | 32.72 |
| CDX74756 | Canola | nucleus | 30.9 | 32.62 |
| CDY18910 | Canola | nucleus | 30.61 | 32.31 |
| KRH48289 | Soybean | nucleus | 31.49 | 32.24 |
| KRH35393 | Soybean | nucleus | 29.15 | 32.15 |
| CDX91612 | Canola | nucleus | 26.82 | 31.94 |
| KRH65181 | Soybean | nucleus | 31.2 | 31.85 |
| Bra022568.1-P | Field mustard | cytosol | 27.41 | 31.65 |
| KRG91429 | Soybean | nucleus | 29.74 | 31.29 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 21.87 | 30.74 |
| KRH03994 | Soybean | nucleus | 30.32 | 30.59 |
| PGSC0003DMT400094424 | Potato | cytosol | 21.28 | 29.8 |
| AT2G45680.1 | Thale cress | cytosol | 30.9 | 29.78 |
| KRH57263 | Soybean | nucleus | 30.03 | 29.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.53 | 29.52 |
| Solyc03g006800.1.1 | Tomato | nucleus | 27.99 | 29.45 |
| GSMUA_Achr10P... | Banana | nucleus | 20.12 | 29.36 |
| PGSC0003DMT400088049 | Potato | cytosol | 22.16 | 28.15 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 22.16 | 28.15 |
| GSMUA_Achr11P... | Banana | nucleus | 20.12 | 27.71 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 21.57 | 27.61 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 21.87 | 27.57 |
| PGSC0003DMT400062327 | Potato | nucleus | 28.86 | 27.05 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 21.87 | 26.13 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 30.9 | 25.79 |
| Solyc08g080150.1.1 | Tomato | nucleus | 27.7 | 25.68 |
| PGSC0003DMT400058534 | Potato | nucleus | 27.41 | 25.13 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 20.7 | 24.57 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 15.16 | 24.53 |
| GSMUA_Achr11P... | Banana | nucleus | 20.41 | 24.39 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 21.28 | 24.09 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 20.41 | 23.81 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 15.45 | 22.36 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 13.41 | 21.8 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 21.28 | 21.73 |
| GSMUA_Achr6P36470_001 | Banana | nucleus | 23.32 | 21.05 |
| GSMUA_Achr10P... | Banana | nucleus | 20.41 | 17.33 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 18.08 | 15.98 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr8G00050_001 | EnsemblPlants:GSMUA_Achr8P00050_001 |
| EnsemblPlants:GSMUA_Achr8T00050_001 | InterPro:IPR017887 | UniProt:M0TLA7 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002961825 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00050_001]
Coordinates
chr8:+:22479..24885
Molecular Weight (calculated)
36313.0 Da
IEP (calculated)
10.107
GRAVY (calculated)
-0.089
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQTHGEED RRRKTDLGAG GGGGAVPTPA VIPVHRFIVP KPEPMEMLGM RAFQIMRRPA SRTKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG
101: ETIQWLLEHA EPAIIAATGT GTVPAIATNI GGTLKIPTEA PTSAPPSRTG GGTVIAGYYP VQDPLLPVGG AISISSGLAP TAGGAQGMVP VWALGGGAAA
201: ASVIPPGALW VLPPPSATAG TSSQSQAWTF PQAPQIVNLA TSRPISTDAL FSGGAHGVNV ATTAGGKHEL QLMSASGEPL RVMGCRFLLN TILTLMQVLE
301: ERTKNSCYKL WRKLEDFIRE EKRFNDWIVY SGSICILVKN MLS
101: ETIQWLLEHA EPAIIAATGT GTVPAIATNI GGTLKIPTEA PTSAPPSRTG GGTVIAGYYP VQDPLLPVGG AISISSGLAP TAGGAQGMVP VWALGGGAAA
201: ASVIPPGALW VLPPPSATAG TSSQSQAWTF PQAPQIVNLA TSRPISTDAL FSGGAHGVNV ATTAGGKHEL QLMSASGEPL RVMGCRFLLN TILTLMQVLE
301: ERTKNSCYKL WRKLEDFIRE EKRFNDWIVY SGSICILVKN MLS
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.