Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- plasma membrane 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P27500_001 | Banana | nucleus | 68.87 | 50.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.34 | 41.41 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 55.19 | 39.8 |
| GSMUA_Achr11P... | Banana | nucleus | 53.3 | 39.37 |
| GSMUA_Achr11P... | Banana | nucleus | 46.23 | 39.36 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 50.94 | 37.63 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 52.83 | 36.96 |
| GSMUA_Achr10P... | Banana | nucleus | 36.32 | 32.77 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 35.85 | 32.07 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 28.3 | 29.7 |
| Os01t0924400-01 | Rice | nucleus | 42.45 | 28.39 |
| Zm00001d011985_P001 | Maize | nucleus | 41.98 | 28.25 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 42.92 | 28.09 |
| EES01992 | Sorghum | nucleus | 42.92 | 28.0 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 41.04 | 25.89 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 41.04 | 25.51 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 41.04 | 24.93 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 21.7 | 24.34 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 30.66 | 23.9 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 30.19 | 23.7 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.11 | 23.22 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 29.25 | 23.13 |
| GSMUA_Achr11P... | Banana | nucleus | 24.53 | 23.01 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 25.94 | 22.54 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 21.7 | 20.91 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 40.09 | 18.28 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 28.77 | 18.15 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 29.72 | 16.24 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 23.11 | 15.41 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 24.53 | 15.16 |
| GSMUA_Achr6P36470_001 | Banana | nucleus | 25.47 | 14.21 |
| GSMUA_Achr10P... | Banana | nucleus | 14.62 | 7.67 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_AchrUn_randomG08350_001 | EnsemblPlants:GSMUA_AchrUn_randomP08350_001 |
| EnsemblPlants:GSMUA_AchrUn_randomT08350_001 | InterPro:IPR017887 | UniProt:M0U7E6 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00029678C0 | SEG:seg | : |
Description
Transcription factor TCP20 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08350_001]
Coordinates
chrchrUn_random:-:36338589..36339676
Molecular Weight (calculated)
21571.4 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.167
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVLCAARVF QLTRELGHKS DGETIQWLLQ QAEPAIIAAT GSGTVPASAL AAAAAAGGPM SHSSATVLAG LHRKLDEVDQ GAATAVRPIW AMVGAAASSN
101: SNLGAGGSGD GSVGSFMQKM GLLHGMELPS PNIGTMSFAS KFGGYGQQLP GLELGLSQDG HMGVLDPQAL GQFYQQMATE RVGAGADGSG QLQQPQQRPA
201: RQAEDDSQGS ED
101: SNLGAGGSGD GSVGSFMQKM GLLHGMELPS PNIGTMSFAS KFGGYGQQLP GLELGLSQDG HMGVLDPQAL GQFYQQMATE RVGAGADGSG QLQQPQQRPA
201: RQAEDDSQGS ED
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.