Factsheet for Zm00001d011985_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01992	Sorghum	nucleus	93.02	90.15
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	89.21	86.73
Os01t0924400-01	Rice	nucleus	72.38	71.92
TraesCS3D01G428700.1	Wheat	nucleus	73.33	68.75
TraesCS3A01G436100.1	Wheat	nucleus, plastid	73.65	68.04
TraesCS3B01G470700.1	Wheat	nucleus	74.92	67.62
GSMUA_AchrUn_...	Banana	nucleus	40.0	55.51
GSMUA_Achr11P...	Banana	nucleus	40.32	51.0
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	73.33	49.68
GSMUA_Achr11P...	Banana	nucleus	41.9	45.99
GSMUA_Achr1P27500_001	Banana	nucleus	41.27	44.98
PGSC0003DMT400052203	Potato	nucleus	32.7	44.4
CDY20065	Canola	cytosol	37.78	44.24
GSMUA_Achr7P23010_001	Banana	nucleus	41.27	42.9
VIT_14s0068g01690.t01	Wine grape	nucleus	40.0	42.57
GSMUA_Achr10P...	Banana	nucleus	31.75	42.55
AT3G27010.1	Thale cress	nucleus	42.22	42.36
GSMUA_Achr7P02680_001	Banana	nucleus	39.37	42.18
Bra039096.1-P	Field mustard	nucleus	37.14	42.09
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	28.25	41.98
CDY00171	Canola	nucleus	36.51	41.67
PGSC0003DMT400090661	Potato	nucleus	36.51	41.22
Solyc02g068200.1.1	Tomato	nucleus	35.56	41.18
GSMUA_Achr5P25030_001	Banana	nucleus	37.46	41.12
Bra025244.1-P	Field mustard	nucleus	39.68	40.72
CDY13675	Canola	nucleus	39.68	40.19
KRG94577	Soybean	nucleus	41.27	39.39
KRH06910	Soybean	nucleus	42.86	39.13
CDY52403	Canola	nucleus	37.78	39.02
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	32.38	36.96
Zm00001d018530_P001	Maize	plastid	23.17	35.27
Zm00001d038444_P001	Maize	nucleus	32.38	34.34
Zm00001d044344_P001	Maize	nucleus	32.06	34.01
GSMUA_Achr6P07930_001	Banana	cytosol	24.44	32.49
Zm00001d025033_P001	Maize	plastid	17.46	31.25
Zm00001d025896_P001	Maize	plastid	19.37	29.47
Zm00001d017350_P001	Maize	plastid	19.68	28.18
Zm00001d051216_P001	Maize	plastid	19.37	27.98
Zm00001d044836_P001	Maize	nucleus	27.3	24.09
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	29.21	23.65
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	29.52	23.25
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	27.62	22.96
Zm00001d023565_P001	Maize	nucleus	28.25	21.98
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	26.03	21.19
Zm00001d031725_P001	Maize	nucleus	23.49	21.14
Zm00001d041866_P001	Maize	nucleus	27.62	20.91
Zm00001d004791_P001	Maize	mitochondrion, nucleus	12.7	19.51
Zm00001d006165_P001	Maize	nucleus	19.37	18.48

Protein Annotations

EntrezGene:100274570	MapMan:15.5.19	MapMan:27.1.5.2	ProteinID:AQK98529.1	UniProt:B4G202	EMBL:BT043390
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EMBL:KJ726837	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00017B7C6C
EnsemblPlantsGene:Zm00001d011985	EnsemblPlants:Zm00001d011985_P001	EnsemblPlants:Zm00001d011985_T001	SEG:seg	:	:

Description

TCP-transcription factor 20Transcription factor TCP11

Coordinates

chr8:-:165936679..165937626

Molecular Weight (calculated)

33082.4 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.672

Length

315 amino acids

Sequence
(BLAST)

001: MDPKFPPPPP LNKTEPTTAT TTTTSTAQQQ QQQLDPKDYQ QQQQQPAQHL QIQIHQSQQD GGGGGKEQQQ LQVVAQPGER RQQALAPKRS SNKDRHTKVD
101: GRGRRIRMPA LCAARIFQLT RELGHKSDGE TVQWLLQQAE PAIVAATGTG TIPASALASV APSLPSPTSG LARPHHHMWA PSAGFSSPSF LNSAAAGTGD
201: AAGIMQRMGI PAGFELPGAS AAGATLGAGG HIGFAPMFAG HAAAMPGLEL GLSQDGHIGV LAAQSISQFY HQVGAAAGGG GQMHHAHGHH HHHHQQQEDG
301: EDDREDGESD DESGQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.