Factsheet for Zm00001d038444_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044344_P001	Maize	nucleus	99.66	99.66
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	84.51	90.94
Solyc02g094290.1.1	Tomato	cytosol	16.16	42.48
Zm00001d011985_P001	Maize	nucleus	34.34	32.38
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	32.32	29.63
Zm00001d018530_P001	Maize	plastid	17.85	25.6
Zm00001d025033_P001	Maize	plastid	14.48	24.43
Zm00001d025896_P001	Maize	plastid	15.82	22.71
Zm00001d051216_P001	Maize	plastid	14.48	19.72
Zm00001d017350_P001	Maize	plastid	14.48	19.55
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	23.23	17.74
Zm00001d044836_P001	Maize	nucleus	21.21	17.65
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	22.56	16.75
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	21.21	16.62
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	21.55	16.54
Zm00001d006165_P001	Maize	nucleus	17.17	15.45
Zm00001d023565_P001	Maize	nucleus	20.88	15.31
Zm00001d041866_P001	Maize	nucleus	20.54	14.66
Zm00001d031725_P001	Maize	nucleus	16.84	14.29
Zm00001d004791_P001	Maize	mitochondrion, nucleus	8.42	12.2

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6M6D3	ProteinID:AQK86639.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI0008435F22	EnsemblPlantsGene:Zm00001d038444	EnsemblPlants:Zm00001d038444_P001	EnsemblPlants:Zm00001d038444_T001	SEG:seg

Description

Transcription factor TCP11

Coordinates

chr6:-:157394282..157395774

Molecular Weight (calculated)

32349.9 Da

IEP (calculated)

10.787

GRAVY (calculated)

-0.886

Length

297 amino acids

Sequence
(BLAST)

001: MTVLHHSHLP TDTKAERKGW WPHTSVSTAE IAALCRASER VTQTCSGRWC ACGHRRSLIV SFTYREHRRG GESHDGPQVP PPPPLNKTEP TTATTTTTST
101: AQQQQLDPKD YHQQQQPAQH LQIQIHQSPQ QDGGGRGKEE EQLQVVAQPG ERRQQPLAPK RSSNKDRHTK VDGRGRRIWM PALCAARIFQ LTRELDHNGE
201: REDMERNRVR AWRLSSSVVA RTAAGAAGAG RGIAGGGMRP RILPPARYGG GIGMEEESRD GTGRPVFAAG MAAGGSWQTS GRTGLGSGGS LQSSLNS

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.