Factsheet for Zm00001d053020_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004791_P001	nucleus
Zm00001d006822_P001
Zm00001d023565_P001	nucleus
Zm00001d041866_P001	nucleus
Zm00001d053020_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d004791_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d023565_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d041866_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d053020_P001	AT1G58100.1	23760157
AT1G58100.1	Zm00001d006822_P001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G019380.1	Barley	nucleus, plastid	60.72	61.2
TraesCS4B01G093700.1	Wheat	nucleus, plastid	60.21	61.15
TraesCS4A01G222700.1	Wheat	nucleus, plastid	60.72	61.04
TraesCS4D01G090500.1	Wheat	nucleus, plastid	60.47	60.78
Zm00001d023565_P001	Maize	nucleus	49.35	47.16
Zm00001d041866_P001	Maize	nucleus	49.35	45.91
Zm00001d004791_P001	Maize	mitochondrion, nucleus	21.71	40.98
KRH06094	Soybean	plastid	36.43	39.06
CDY71135	Canola	nucleus	38.5	38.01
CDY39914	Canola	nucleus, plastid	38.24	37.56
Bra027886.1-P	Field mustard	nucleus, plastid	37.98	37.31
Zm00001d018530_P001	Maize	plastid	19.9	37.2
AT1G58100.1	Thale cress	nucleus	38.24	36.91
Zm00001d025896_P001	Maize	plastid	19.38	36.23
Zm00001d025033_P001	Maize	plastid	15.76	34.66
Zm00001d051216_P001	Maize	plastid	19.12	33.95
Zm00001d017350_P001	Maize	plastid	19.12	33.64
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	36.95	31.09
Solyc01g103780.2.1	Tomato	nucleus	35.4	30.79
Zm00001d044836_P001	Maize	nucleus	27.65	29.97
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	29.2	29.05
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	28.17	28.76
PGSC0003DMT400064164	Potato	nucleus	39.53	28.65
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	29.2	28.25
GSMUA_Achr6P17840_001	Banana	cytosol	27.13	27.06
GSMUA_Achr10P...	Banana	nucleus	27.65	26.49
Zm00001d011985_P001	Maize	nucleus	21.19	26.03
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	21.71	25.93
Zm00001d031725_P001	Maize	nucleus	22.48	24.86
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	16.02	22.46
Zm00001d006165_P001	Maize	nucleus	19.12	22.42
Zm00001d038444_P001	Maize	nucleus	16.54	21.55
Zm00001d044344_P001	Maize	nucleus	16.28	21.21

Protein Annotations

EntrezGene:100382180	MapMan:15.5.19	ProteinID:AQK58569.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	UniProt:K7U8N6	EMBL:KJ726897	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF70	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002215900	EnsemblPlantsGene:Zm00001d053020	EnsemblPlants:Zm00001d053020_P001
EnsemblPlants:Zm00001d053020_T001	SEG:seg	:	:	:	:

Description

TCP-transcription factor 2Transcription factor TCP8

Coordinates

chr4:-:209499482..209500645

Molecular Weight (calculated)

40762.2 Da

IEP (calculated)

9.780

GRAVY (calculated)

-0.646

Length

387 amino acids

Sequence
(BLAST)

001: MDAPSSSTST STNSSRSASE QQHHHQQQQQ RYHHHHQAAG HQPFYYAAAS AAGMAQFMGS RAIAPAVPVD VQLAQQQQQS SAAAAAAPAG SSGAAADKTK
101: AVVPAAAAGS KRPTKDRHTK VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS LAVSLRSAAG ASHPSSASRA
201: VAFHHLPPPQ HEVAAMLGWN HHHPHQQQQQ QLLPPPPQQQ APQDPGAGEF MRKRYREGDD DLFKDPAARQ HHPDGGDAEE HKARVTPATA MWAVAPNSAG
301: AGAFWMQPTW AFGGGGSTVQ APLQFMSTRS ANNFPAGTTM DANIGMLAAL NASGGVQQQD EGQTREMAQR HRGANGGDAG RGAASPQ

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.