Factsheet for HORVU4Hr1G019380.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G032910.2
HORVU4Hr1G019380.1	nucleus
HORVU5Hr1G035980.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	HORVU4Hr1G019380.1	AT1G58100.1	23760157
AT1G58100.1	HORVU5Hr1G035980.1	AT1G58100.1	23760157
AT1G58100.1	HORVU4Hr1G019380.1	AT1G58100.1	23760157
AT1G58100.1	HORVU5Hr1G035980.1	AT1G58100.1	23760157
AT1G58100.1	HORVU2Hr1G032910.2	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G093700.1	Wheat	nucleus, plastid	93.75	94.49
TraesCS4A01G222700.1	Wheat	nucleus, plastid	94.53	94.29
TraesCS4D01G090500.1	Wheat	nucleus, plastid	94.27	94.03
Os11t0175700-00	Rice	nucleus, plastid	69.53	65.76
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	61.2	60.72
HORVU5Hr1G035980.1	Barley	cytosol	47.92	48.29
HORVU2Hr1G090640.1	Barley	plastid	20.31	38.61
KRH06094	Soybean	plastid	36.2	38.5
AT1G58100.1	Thale cress	nucleus	39.32	37.66
CDY39914	Canola	nucleus, plastid	38.54	37.56
Bra027886.1-P	Field mustard	nucleus, plastid	38.28	37.31
CDY71135	Canola	nucleus	37.76	36.99
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	23.18	33.33
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	37.5	31.3
HORVU6Hr1G059930.1	Barley	plastid	18.75	31.17
Solyc01g103780.2.1	Tomato	nucleus	34.9	30.11
PGSC0003DMT400064164	Potato	nucleus	39.58	28.46
GSMUA_Achr6P17840_001	Banana	cytosol	28.12	27.84
GSMUA_Achr10P...	Banana	nucleus	28.65	27.23
HORVU5Hr1G080210.1	Barley	cytosol	19.01	26.74
HORVU6Hr1G075650.1	Barley	nucleus	27.34	26.12
HORVU7Hr1G038130.1	Barley	nucleus	25.78	24.75
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	23.44	24.0
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	20.57	16.99

Protein Annotations

MapMan:15.5.19	EMBL:AK361002	UniProt:F2DAT8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU4Hr1G019380	EnsemblPlants:HORVU4Hr1G019380.1	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF36	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002006203	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DAT8]

Coordinates

chrchr4H:-:92763298..92766044

Molecular Weight (calculated)

40673.0 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.821

Length

384 amino acids

Sequence
(BLAST)

001: MDQQGAAPSS STSTSTNSSR STSDHPHHAP AAAHHHPFYY AAAAATAAAQ PPPFMGSLAM VPAAAPAGGQ PPNHSQSITV AEPPSEKKVA KRPTKDRHTK
101: VDGRGRRIRM PALCAARVFQ LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL QHQPQHDVAA MLGFHGHHQH
201: QLLPPPPQQQ QHHHHHHQQQ HPEAPQDPGA GEFMRKRYRE ADDLFKDTGR HQDQEGGGEP AQKPRPAPPP TAVSGAMWAV APNSAAGGGG GAFWMQPAWA
301: FGAGNTVQAP LQFISRSSFP GGMGDTNLGM LAGLNSCGRS TGGEQQHQQQ QQEEEGQPPE MDEHRRGSTS NGHEAGGHSA ASPQ

Best Arabidopsis Sequence Match ( AT1G35560.1 )
(BLAST)

001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P

Arabidopsis Description

TCP23Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.