Factsheet for HORVU2Hr1G032910.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G014940.1
HORVU4Hr1G019380.1
HORVU5Hr1G035980.1
HORVU6Hr1G004180.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	HORVU4Hr1G019380.1	AT1G58100.1	21297037
AT5G60960.1	HORVU5Hr1G035980.1	AT1G58100.1	21297037
AT5G60960.1	HORVU0Hr1G014940.1	AT5G24680.1	21297037
AT5G60960.1	HORVU6Hr1G004180.9	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G201800.1	Wheat	mitochondrion	93.39	96.68
TraesCS2D01G182800.1	Wheat	mitochondrion	93.19	96.47
TraesCS2A01G175500.1	Wheat	mitochondrion	92.99	96.27
Os07t0603900-01	Rice	mitochondrion	81.96	84.16
EER97500	Sorghum	mitochondrion	79.56	82.02
Zm00001d006822_P001	Maize	mitochondrion	77.56	79.96
GSMUA_Achr2P06230_001	Banana	mitochondrion	59.52	57.89
KRH34092	Soybean	mitochondrion	45.29	44.4
KRG92684	Soybean	mitochondrion, plastid	44.89	44.01
Bra012992.1-P	Field mustard	mitochondrion	45.09	43.69
AT5G60960.1	Thale cress	plastid	43.29	41.46
VIT_17s0000g05090.t01	Wine grape	mitochondrion	44.09	41.35
Solyc03g114920.1.1	Tomato	mitochondrion	42.28	40.42
PGSC0003DMT400063323	Potato	mitochondrion	41.88	40.12
HORVU4Hr1G025220.1	Barley	cytosol, plastid	15.23	20.49
HORVU3Hr1G081750.4	Barley	mitochondrion	20.64	15.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	UniProt:A0A287HLZ9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:HORVU2Hr1G032910	EnsemblPlants:HORVU2Hr1G032910.2	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B4705BF	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:129960953..129964287

Molecular Weight (calculated)

55495.8 Da

IEP (calculated)

10.476

GRAVY (calculated)

-0.245

Length

499 amino acids

Sequence
(BLAST)

001: EVETSPNPRS LDLPPPKMWR RHLLRRLLPS PVTAGTPCPL VRHLSTAPAP SSTTDTTSIA SSLAAAVTKL SSTLAPATSP DAYFSLHFSD VRPTNALLAE
101: TLSLSPPATS RAAADLFRFL VRRSLHPSDG ALALVVRHLA RRRDFPAVRT LLQEFPSALG PDTVDAYLFH LARAGRATDA LKVFDELPGE LRTRRALTSL
201: VSSLSSEGFP QLAERAVKKI AHEIFPDDNI CTLLVSGYAD AGKLDHALRL IGETRNGGFQ PGLDAYNAVL DCVCRLCRKK DPLRMPVEAE KFLVDMEANG
301: IPRDAGTFRV LIKNLCKIRR TEDAIKLFGQ MGEWGCSPDA DTYLVLIKSL YQAARISEGD EMMIWMRSAG FGDKLDRKAY YGFIKVLCGI ERVEHAVKVF
401: RLMKGYGHAP GTKSYSLLIE KLARHNLGDR SNALFREALA RGVTVTPGVY KIDKRYVKEK KEKKVKKRLT LPEKKILKSK RLYKLKMSFV KKPKRQMKS

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.