Factsheet for AT5G60960.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012992.1-P	Field mustard	mitochondrion	79.85	80.78
KRG92684	Soybean	mitochondrion, plastid	58.93	60.31
KRH34092	Soybean	mitochondrion	58.93	60.31
VIT_17s0000g05090.t01	Wine grape	mitochondrion	59.69	58.46
PGSC0003DMT400063323	Potato	mitochondrion	56.43	56.43
Solyc03g114920.1.1	Tomato	mitochondrion	56.24	56.13
GSMUA_Achr2P06230_001	Banana	mitochondrion	46.07	46.78
Zm00001d006822_P001	Maize	mitochondrion	42.03	45.25
TraesCS2D01G182800.1	Wheat	mitochondrion	41.65	45.02
EER97500	Sorghum	mitochondrion	41.65	44.83
TraesCS2B01G201800.1	Wheat	mitochondrion	41.46	44.81
Os07t0603900-01	Rice	mitochondrion	41.65	44.65
TraesCS2A01G175500.1	Wheat	mitochondrion	41.27	44.61
HORVU2Hr1G032910.2	Barley	plastid	41.46	43.29
AT5G61370.1	Thale cress	mitochondrion	20.54	21.97

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	EntrezGene:836217	UniProt:A0A178U8V9	ProteinID:AED97403.1	ArrayExpress:AT5G60960
EnsemblPlantsGene:AT5G60960	RefSeq:AT5G60960	TAIR:AT5G60960	RefSeq:AT5G60960-TAIR-G	EnsemblPlants:AT5G60960.1	TAIR:AT5G60960.1
EMBL:AY086450	Unigene:At.8467	ProteinID:BAB10645.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006412	GO:GO:0006417
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_200904.1	ProteinID:OAO90110.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007057	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	UniProt:Q9FME4	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000A5396
SEG:seg	:	:	:	:	:

Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]

Coordinates

chr5:-:24528089..24530032

Molecular Weight (calculated)

59146.8 Da

IEP (calculated)

9.896

GRAVY (calculated)

-0.488

Length

521 amino acids

Sequence
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.