Factsheet for GSMUA_Achr2P06230_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P07390_001
GSMUA_Achr6P17840_001
GSMUA_Achr6P36850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	GSMUA_Achr4P07390_001	AT1G44920.1	21297037
AT5G60960.1	GSMUA_Achr10P...	AT1G58100.1	21297037
AT5G60960.1	GSMUA_Achr6P17840_001	AT1G58100.1	21297037
AT5G60960.1	GSMUA_Achr6P36850_001	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G175500.1	Wheat	mitochondrion	57.5	61.2
TraesCS2B01G201800.1	Wheat	mitochondrion	57.5	61.2
TraesCS2D01G182800.1	Wheat	mitochondrion	57.31	61.0
Os07t0603900-01	Rice	mitochondrion	57.31	60.49
EER97500	Sorghum	mitochondrion	56.34	59.71
Zm00001d006822_P001	Maize	mitochondrion	56.34	59.71
HORVU2Hr1G032910.2	Barley	plastid	57.89	59.52
KRH34092	Soybean	mitochondrion	48.93	49.31
VIT_17s0000g05090.t01	Wine grape	mitochondrion	50.68	48.87
KRG92684	Soybean	mitochondrion, plastid	48.34	48.72
Bra012992.1-P	Field mustard	mitochondrion	48.54	48.35
PGSC0003DMT400063323	Potato	mitochondrion	48.15	47.41
Solyc03g114920.1.1	Tomato	mitochondrion	47.95	47.13
AT5G60960.1	Thale cress	plastid	46.78	46.07
GSMUA_Achr4P18270_001	Banana	mitochondrion	18.32	21.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr2G06230_001	EnsemblPlants:GSMUA_Achr2P06230_001	EnsemblPlants:GSMUA_Achr2T06230_001	InterPro:IPR002885
InterPro:IPR011990	UniProt:M0S5L4	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002961FFC	SEG:seg

Description

Pentatricopeptide repeat-containing protein At5g60960, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr2G06230_001]

Coordinates

chr2:+:11085011..11086552

Molecular Weight (calculated)

58008.8 Da

IEP (calculated)

10.712

GRAVY (calculated)

-0.219

Length

513 amino acids

Sequence
(BLAST)

001: MWRPPRPPPL RYFLRRVLPG PSPSRSRSLS HSPFPPFCHL IPLPFFPSTI RSFSSSSSAS AVAYSDLARS ISADLVKLSS PADPSSSVLD LPGHFSLHFS
101: DVRFNTRLLA EVLDLSRAAG RSAVDLYRWI VRHRSFTPSD ESLSFLVHFL GRRNDFKAVY DLFSEFRRAV GPLSFRAALD RLVRAGRAAE ALRFFDTAPA
201: DLGIRRDRSA LSSLVATLTE HGFPGYAERA VKSYANEVFP DEEICTALIR GWCAAGKLEE ARRLMGEILR GGFELGTPAY NAILDCVCRL CRKKDPLRLQ
301: PEAEKILFEM ESSGIPRDAE TFRVLITNLC KIRKTEDALK LFRKMSGWGC SADAETYLTL IRSLFQAARV SEGDEMVGWM RSAGFGDKLD RKAYYGFIKI
401: LCGIERVEHA VKVFRLMKGY GHAPGVKTYS LLIEKLAMHN QSDRANALFS EAVARGVPVT PKVYKVDKRF VKVKEKKVKK RLTLPEKTKM KRRRLKMLRL
501: SFVKKPKLMR KMT

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.