Factsheet for Bra012992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009788.1-P
Bra013951.1-P
Bra027886.1-P
Bra041008.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	Bra041008.1-P	AT1G44920.1	21297037
AT5G60960.1	Bra027886.1-P	AT1G58100.1	21297037
AT5G60960.1	Bra013951.1-P	AT4G26110.1	21297037
AT5G60960.1	Bra009788.1-P	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G60960.1	Thale cress	plastid	80.78	79.85
KRG92684	Soybean	mitochondrion, plastid	59.81	60.51
KRH34092	Soybean	mitochondrion	59.61	60.31
VIT_17s0000g05090.t01	Wine grape	mitochondrion	60.39	58.46
PGSC0003DMT400063323	Potato	mitochondrion	58.25	57.58
Solyc03g114920.1.1	Tomato	mitochondrion	57.86	57.09
GSMUA_Achr2P06230_001	Banana	mitochondrion	48.35	48.54
Os07t0603900-01	Rice	mitochondrion	44.08	46.71
Zm00001d006822_P001	Maize	mitochondrion	43.88	46.69
TraesCS2A01G175500.1	Wheat	mitochondrion	43.3	46.27
EER97500	Sorghum	mitochondrion	43.3	46.07
TraesCS2B01G201800.1	Wheat	mitochondrion	43.11	46.06
TraesCS2D01G182800.1	Wheat	mitochondrion	43.11	46.06
HORVU2Hr1G032910.2	Barley	plastid	43.69	45.09
Bra012965.1-P	Field mustard	mitochondrion	20.39	21.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	EnsemblPlantsGene:Bra012992	EnsemblPlants:Bra012992.1	EnsemblPlants:Bra012992.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	UniProt:M4D932	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002540500
SEG:seg	:	:	:	:	:

Description

AT5G60960 (E=1e-232) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:-:21162780..21164327

Molecular Weight (calculated)

58284.8 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.454

Length

515 amino acids

Sequence
(BLAST)

001: MPPPLPSLQL RRLLLRTFTS SSSAPPLRII SPTTSFPHPP PPRFSLFPSR LFSSETNAAD PPTPDPTQIA LSFSKELTGT PEADPHSISQ RFHLSFSHIA
101: PTRDLILQTL KLSPEAGRAA LGFNDWLDST AAFSHDDETV SLFVDYFGRR KDFKGMQEII AKYKGVAGAK TLDSAVDRLV RAGRAKQAVE FFERMESDYG
201: LKRDRESLTL VVKKLCEKGH ASFAEKMVKS TANEIFPDEK ICDLLISGWC AAEKLDEATR FAGEMARGGF EIGTLAYNVI LDCVCKLCRK KDPFRLQAEV
301: EKVLLEMETR GVPRNTETFN VLINNLCKIR RTEEAMELFG RMGEWGCQPD AETYLVLIRS LYQAARIGEG DEMIDKMKSA GYGKALDKKE YYGFLKILCG
401: IERLEHAMIV FKNMKADGCK PGIKTYDLLM GKMCANNQLT RANGLYKEAA RRGVAVSPKE YRVDPRFLKK KSKEVDSNVK KRETLPEKTA RKRRRLKQIN
501: MSFVKKPHNK MRRRM

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.