Factsheet for TraesCS2D01G182800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G222700.1
TraesCS4A01G255600.1
TraesCS4B01G059400.1
TraesCS4B01G093700.1
TraesCS4D01G059100.1
TraesCS4D01G090500.1
TraesCS5A01G121800.1
TraesCS5B01G117100.1
TraesCS6A01G024000.1
TraesCS6B01G032700.1
TraesCS6D01G027400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	TraesCS4A01G255600.1	AT1G44920.1	21297037
AT5G60960.1	TraesCS4B01G059400.1	AT1G44920.1	21297037
AT5G60960.1	TraesCS4D01G059100.1	AT1G44920.1	21297037
AT5G60960.1	TraesCS4A01G222700.1	AT1G58100.1	21297037
AT5G60960.1	TraesCS4B01G093700.1	AT1G58100.1	21297037
AT5G60960.1	TraesCS4D01G090500.1	AT1G58100.1	21297037
AT5G60960.1	TraesCS5A01G121800.1	AT1G58100.1	21297037
AT5G60960.1	TraesCS5B01G117100.1	AT1G58100.1	21297037
AT5G60960.1	TraesCS6A01G024000.1	AT5G24680.1	21297037
AT5G60960.1	TraesCS6B01G032700.1	AT5G24680.1	21297037
AT5G60960.1	TraesCS6D01G027400.1	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G175500.1	Wheat	mitochondrion	99.38	99.38
TraesCS2B01G201800.1	Wheat	mitochondrion	99.38	99.38
HORVU2Hr1G032910.2	Barley	plastid	96.47	93.19
Os07t0603900-01	Rice	mitochondrion	85.48	84.77
EER97500	Sorghum	mitochondrion	83.4	83.06
Zm00001d006822_P001	Maize	mitochondrion	80.91	80.58
GSMUA_Achr2P06230_001	Banana	mitochondrion	61.0	57.31
KRH34092	Soybean	mitochondrion	46.27	43.81
KRG92684	Soybean	mitochondrion, plastid	46.06	43.61
Bra012992.1-P	Field mustard	mitochondrion	46.06	43.11
AT5G60960.1	Thale cress	plastid	45.02	41.65
VIT_17s0000g05090.t01	Wine grape	mitochondrion	45.23	40.98
Solyc03g114920.1.1	Tomato	mitochondrion	43.98	40.61
PGSC0003DMT400063323	Potato	mitochondrion	43.57	40.31
TraesCS3D01G380400.1	Wheat	mitochondrion	21.58	21.18

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS2D01G182800	EnsemblPlants:TraesCS2D01G182800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:-:127087312..127088760

Molecular Weight (calculated)

53566.4 Da

IEP (calculated)

10.538

GRAVY (calculated)

-0.232

Length

482 amino acids

Sequence
(BLAST)

001: MWRRHLLRRL LPSPATAGTP SPLVRHLSTT PTPSSTTDTT SIASSLAAAV TKLSSTPAPA TSPDAYFSLH FSDVRPTNAL LAETLSLSPP ATSRAAADLF
101: RFLVRRSLHP SDGALALVVR HLARRRDFPA VRTLLQEFPS ALGPDTVDAY LFHLARAGRA TDALKVFDEL PGELRTRGAL TSLVSSLSSE GFPQLAERAV
201: KKIAHEIFPD DNICTLLVSG YADAGKLDHA LRLIGETRNG GFQPGLDAYN AVLDCVCRLC RKKDPLRMPV EAEKFLVDME ANGIPRDAGT FRVLIKNLCK
301: IRRTEDAMNL FRQMGEWGCS PDADTYLVLI KSLYQAARIS EGDELMIWMR SAGFGDKLDR KAYYGFIKVL CGIERVEHAV KVFRLMKGYG HAPGTKSYSL
401: LIEKLASHNL GDRSNALFRE AVARGITVTP GVYKIDKRYV KEKKEKKVKK KLTLPEKKIL KSKRLYKLKM SFVKKPKRRM RA

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.