Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G175500.1 | |
| TraesCS2B01G201800.1 | |
| TraesCS2D01G182800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44920.1 | TraesCS2A01G175500.1 | AT5G60960.1 | 21297037 |
| AT1G44920.1 | TraesCS2B01G201800.1 | AT5G60960.1 | 21297037 |
| AT1G44920.1 | TraesCS2D01G182800.1 | AT5G60960.1 | 21297037 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G059100.1 | Wheat | plastid | 95.86 | 95.15 |
| TraesCS4A01G255600.1 | Wheat | plastid | 89.47 | 90.15 |
| Zm00001d033873_P001 | Maize | plastid | 69.92 | 71.26 |
| EER90941 | Sorghum | plastid | 71.05 | 71.05 |
| Os03t0729100-01 | Rice | plastid | 56.02 | 68.04 |
| Zm00001d031553_P001 | Maize | endoplasmic reticulum, extracellular | 25.56 | 68.0 |
| GSMUA_Achr4P07390_001 | Banana | plastid | 51.5 | 51.5 |
| KRH15453 | Soybean | extracellular, golgi, plastid | 16.92 | 49.45 |
| VIT_18s0001g08630.t01 | Wine grape | plastid | 46.99 | 48.08 |
| CDY47956 | Canola | plastid | 43.23 | 45.63 |
| AT1G44920.1 | Thale cress | mitochondrion, plastid | 43.61 | 44.96 |
| CDY12577 | Canola | mitochondrion, plastid | 43.61 | 43.28 |
| KRH05538 | Soybean | plastid | 43.23 | 42.91 |
| Solyc04g077500.2.1 | Tomato | plastid | 43.23 | 40.07 |
| Bra041008.1-P | Field mustard | mitochondrion, plastid | 43.61 | 39.19 |
| PGSC0003DMT400012587 | Potato | plastid | 42.11 | 39.02 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G059400.1 | EnsemblPlantsGene:TraesCS4B01G059400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF3054 | PANTHER:PTHR35283 | PFAM:PF11255 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:50725324..50728143
Molecular Weight (calculated)
27545.3 Da
IEP (calculated)
10.311
GRAVY (calculated)
0.243
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLVSQAANG SLSARRLPSK PLASRRGANP YPLFAGPRVA RRRLVLSGAA DARDAPRRAS ASPPAHAAAG EGPSGSPAAA EDPVLLGVSD DRVPLEGVIQ
101: VEKPGQADAQ SKLVSYAKIG LLAGGDLLCL LVFSAIGRLS HGLPVLDVET FKTADPFIAG WLLSAYLLGG FGDDAKGSNG VGNAVTVAAK SWAVGIPLGI
201: AIRSVTAGHI PQIPFVLVAM GSTGVLLTAW RALISQVLSA GQSKKDDVYR KGNPFELFEV RSFFIF
101: VEKPGQADAQ SKLVSYAKIG LLAGGDLLCL LVFSAIGRLS HGLPVLDVET FKTADPFIAG WLLSAYLLGG FGDDAKGSNG VGNAVTVAAK SWAVGIPLGI
201: AIRSVTAGHI PQIPFVLVAM GSTGVLLTAW RALISQVLSA GQSKKDDVYR KGNPFELFEV RSFFIF
001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
Arabidopsis Description
T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.