Factsheet for Zm00001d033873_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006822_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	Zm00001d006822_P001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90941	Sorghum	plastid	92.34	90.6
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	31.03	81.0
Os03t0729100-01	Rice	plastid	62.07	73.97
TraesCS4D01G059100.1	Wheat	plastid	75.1	73.13
TraesCS4A01G255600.1	Wheat	plastid	73.18	72.35
TraesCS4B01G059400.1	Wheat	plastid	71.26	69.92
KRH15453	Soybean	extracellular, golgi, plastid	20.31	58.24
GSMUA_Achr4P07390_001	Banana	plastid	57.85	56.77
VIT_18s0001g08630.t01	Wine grape	plastid	54.41	54.62
CDY47956	Canola	plastid	47.89	49.6
AT1G44920.1	Thale cress	mitochondrion, plastid	47.51	48.06
CDY12577	Canola	mitochondrion, plastid	48.66	47.39
Solyc04g077500.2.1	Tomato	plastid	50.19	45.64
KRH05538	Soybean	plastid	46.74	45.52
PGSC0003DMT400012587	Potato	plastid	48.66	44.25
Bra041008.1-P	Field mustard	mitochondrion, plastid	46.36	40.88

Protein Annotations

EMBL:EU959501	EnsemblPlants:Zm00001d033873_P001	EnsemblPlants:Zm00001d033873_T001	EnsemblPlantsGene:Zm00001d033873	EntrezGene:100276583	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF3054	PANTHER:PTHR35283	PFAM:PF11255	ProteinID:ONM08853.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000182BE41	UniProt:B6T3D6	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:-:277023034..277026661

Molecular Weight (calculated)

27356.0 Da

IEP (calculated)

10.031

GRAVY (calculated)

0.143

Length

261 amino acids

Sequence
(BLAST)

001: MLLVSQAANG SLSARRLPSK PPGPSTTNPY PLFANPRLLR RRLALSGAGA DQAPRRAAPT PAAAGEGPSA SSTEDPVLVR VADDGVPLEG VIQIEKPGDA
101: AAESKLVSYA KLGLLAGGDV FCLLLFSAIG RFSHGLPVLD AETFKTADPF IAGWLLSAYL LGGFGDDAKG RNGVGSAVIT AAKSWAVGIP LGLAIRAVTS
201: GHLPPTPFIL VTMGSTGVLL TAWRALVSQL FSNQQKQQDD VYRRGSPFEL FELLTSLVRR W

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.