Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12577 | Canola | mitochondrion, plastid | 95.63 | 89.93 |
| Bra041008.1-P | Field mustard | mitochondrion, plastid | 96.83 | 82.43 |
| AT1G44920.1 | Thale cress | mitochondrion, plastid | 78.17 | 76.36 |
| KRH15453 | Soybean | extracellular, golgi, plastid | 21.83 | 60.44 |
| VIT_18s0001g08630.t01 | Wine grape | plastid | 61.51 | 59.62 |
| GSMUA_Achr4P07390_001 | Banana | plastid | 53.17 | 50.38 |
| KRH05538 | Soybean | plastid | 52.78 | 49.63 |
| Os03t0729100-01 | Rice | plastid | 42.86 | 49.32 |
| Zm00001d033873_P001 | Maize | plastid | 49.6 | 47.89 |
| EER90941 | Sorghum | plastid | 50.4 | 47.74 |
| Solyc04g077500.2.1 | Tomato | plastid | 54.37 | 47.74 |
| PGSC0003DMT400012587 | Potato | plastid | 53.97 | 47.39 |
| Zm00001d031553_P001 | Maize | endoplasmic reticulum, extracellular | 18.65 | 47.0 |
| TraesCS4D01G059100.1 | Wheat | plastid | 48.81 | 45.9 |
| TraesCS4A01G255600.1 | Wheat | plastid | 47.62 | 45.45 |
| TraesCS4B01G059400.1 | Wheat | plastid | 45.63 | 43.23 |
Protein Annotations
| EnsemblPlants:CDY47956 | EnsemblPlantsGene:GSBRNA2T00088577001 | GO:A0A078IDH2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF3054 | PANTHER:PTHR35283 | PFAM:PF11255 | ProteinID:CDY47956 | ProteinID:CDY47956.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EDBFC9 | UniProt:A0A078IDH2 | MapMan:35.2 | : | : |
Description
BnaA10g28280DBnaA10g28280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDH2]
Coordinates
chrLK032746:+:139449..141482
Molecular Weight (calculated)
27163.9 Da
IEP (calculated)
10.785
GRAVY (calculated)
0.115
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVLRAPTGP VSAARFITKP NPRIPSSDPW LGLVPSANTR RRRRVVLTLS NSDSNGSVKS ATPSTPPTGD DTVFVGQENV PLEGVIQFDK PKSDASIKKW
101: GRVALLAGGD VLALLIFSAI GRFSHGFPVL SFDTLHTADP FIAGWFLSAY FLGGYAEEGR GMKGQSKAVL AAAKTWALGV PLGVIIRSTS SGHIPSYSFI
201: LVTMGSTAVL LIGWRALLFS VLPSESKKKD DTYRKGSAFE LFELLTSLIR RW
101: GRVALLAGGD VLALLIFSAI GRFSHGFPVL SFDTLHTADP FIAGWFLSAY FLGGYAEEGR GMKGQSKAVL AAAKTWALGV PLGVIIRSTS SGHIPSYSFI
201: LVTMGSTAVL LIGWRALLFS VLPSESKKKD DTYRKGSAFE LFELLTSLIR RW
001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
Arabidopsis Description
T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.