Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063323 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44920.1 | PGSC0003DMT400063323 | AT5G60960.1 | 21297037 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077500.2.1 | Tomato | plastid | 95.47 | 95.47 |
| KRH15453 | Soybean | extracellular, golgi, plastid | 19.51 | 61.54 |
| VIT_18s0001g08630.t01 | Wine grape | plastid | 53.31 | 58.85 |
| Zm00001d031553_P001 | Maize | endoplasmic reticulum, extracellular | 19.16 | 55.0 |
| AT1G44920.1 | Thale cress | mitochondrion, plastid | 48.78 | 54.26 |
| CDY47956 | Canola | plastid | 47.39 | 53.97 |
| GSMUA_Achr4P07390_001 | Banana | plastid | 48.43 | 52.26 |
| CDY12577 | Canola | mitochondrion, plastid | 48.43 | 51.87 |
| KRH05538 | Soybean | plastid | 47.04 | 50.37 |
| Zm00001d033873_P001 | Maize | plastid | 44.25 | 48.66 |
| EER90941 | Sorghum | plastid | 43.9 | 47.37 |
| Os03t0729100-01 | Rice | plastid | 35.89 | 47.03 |
| TraesCS4A01G255600.1 | Wheat | plastid | 42.51 | 46.21 |
| TraesCS4D01G059100.1 | Wheat | plastid | 41.81 | 44.78 |
| Bra041008.1-P | Field mustard | mitochondrion, plastid | 45.99 | 44.59 |
| TraesCS4B01G059400.1 | Wheat | plastid | 39.02 | 42.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012587 | EnsemblPlantsGene:PGSC0003DMG400004920 | EntrezGene:102581784 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF3054 |
| PANTHER:PTHR35283 | PFAM:PF11255 | PGSC:PGSC0003DMG400004920 | RefSeq:XP_006356838.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002953B70 | UniProt:M1A1H1 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004920]
Coordinates
chr4:-:66603755..66610050
Molecular Weight (calculated)
30354.2 Da
IEP (calculated)
10.045
GRAVY (calculated)
0.083
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVGTMSLL AQAPAGALSA THRCSLTFTH PVPPLFSHRR PTQISTKNQI HGSKNGPKPI TLANAESSSS GAGAPREAST ATTSTAGSSN SSNGSASFSP
101: EDSISFVGQN SVPLEGVIQF EKPDSNSISD KINKWGWVAL LAGGDVAVLL LFSAIGRFSH GFTVFDPETL RTADPFIAGW FLSAYFLGGF GEDGKGKNGL
201: FKAFIAATKS WSLGIPVGIA LRAASVGHIP PVNFVIVTMG STAVLLIGWR TLLFSILPTD KPKKNDVYKS GNPFEFLELL TSLVRRW
101: EDSISFVGQN SVPLEGVIQF EKPDSNSISD KINKWGWVAL LAGGDVAVLL LFSAIGRFSH GFTVFDPETL RTADPFIAGW FLSAYFLGGF GEDGKGKNGL
201: FKAFIAATKS WSLGIPVGIA LRAASVGHIP PVNFVIVTMG STAVLLIGWR TLLFSILPTD KPKKNDVYKS GNPFEFLELL TSLVRRW
001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
Arabidopsis Description
T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.