Factsheet for Solyc04g077500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114920.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	Solyc03g114920.1.1	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012587	Potato	plastid	95.47	95.47
KRH15453	Soybean	extracellular, golgi, plastid	19.51	61.54
VIT_18s0001g08630.t01	Wine grape	plastid	54.01	59.62
AT1G44920.1	Thale cress	mitochondrion, plastid	49.48	55.04
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	19.16	55.0
CDY47956	Canola	plastid	47.74	54.37
GSMUA_Achr4P07390_001	Banana	plastid	49.48	53.38
CDY12577	Canola	mitochondrion, plastid	49.13	52.61
KRH05538	Soybean	plastid	47.04	50.37
Zm00001d033873_P001	Maize	plastid	45.64	50.19
EER90941	Sorghum	plastid	45.99	49.62
Os03t0729100-01	Rice	plastid	37.63	49.32
TraesCS4A01G255600.1	Wheat	plastid	43.55	47.35
TraesCS4D01G059100.1	Wheat	plastid	42.86	45.9
Bra041008.1-P	Field mustard	mitochondrion, plastid	46.34	44.93
TraesCS4B01G059400.1	Wheat	plastid	40.07	43.23

Protein Annotations

EnsemblPlants:Solyc04g077500.2.1	EnsemblPlantsGene:Solyc04g077500.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:DUF3054	PANTHER:PTHR35283
PFAM:PF11255	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276647D	UniProt:K4BUI7	MapMan:35.2

Description

No Description!

Coordinates

chr4:-:62443833..62450753

Molecular Weight (calculated)

30383.3 Da

IEP (calculated)

9.837

GRAVY (calculated)

0.121

Length

287 amino acids

Sequence
(BLAST)

001: MEVVGTMSLL AQAPAGALSA THRCSLTFTH PIPPLFSHRR PTQISTKNPI HGSKNGQKPI TLANAESSSS GAGVPREAST ATTSTVGSSN SSNGSASFST
101: EDSISFVGQD SVPLEGVIQF EKPDSNSISD KINKWGWVAL LAGGDVAVLL LFSAIGRFSH GFAVFDSETL RTADPFIAGW LLSAYFLGGF GEDGKGKNGL
201: FKAFIAATKS WSLGIPLGIA IRAASVGHIP PVNFIIVTMG STAVLLIGWR TLLFSILPTD KPKKNDVYKS GNPFEFLELL TSLVRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.