Factsheet for Solyc03g114920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g077500.2.1
Solyc05g018810.2.1
Solyc06g072970.2.1
Solyc12g008940.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	Solyc04g077500.2.1	AT1G44920.1	21297037
AT5G60960.1	Solyc05g018810.2.1	AT4G26110.1	21297037
AT5G60960.1	Solyc12g008940.1.1	AT4G26110.1	21297037
AT5G60960.1	Solyc06g072970.2.1	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063323	Potato	mitochondrion	97.13	97.31
KRH34092	Soybean	mitochondrion	61.11	62.67
KRG92684	Soybean	mitochondrion, plastid	59.77	61.3
VIT_17s0000g05090.t01	Wine grape	mitochondrion	61.49	60.34
Bra012992.1-P	Field mustard	mitochondrion	57.09	57.86
AT5G60960.1	Thale cress	plastid	56.13	56.24
GSMUA_Achr2P06230_001	Banana	mitochondrion	47.13	47.95
EER97500	Sorghum	mitochondrion	42.53	45.87
Zm00001d006822_P001	Maize	mitochondrion	42.34	45.66
Os07t0603900-01	Rice	mitochondrion	42.34	45.47
TraesCS2A01G175500.1	Wheat	mitochondrion	40.61	43.98
TraesCS2D01G182800.1	Wheat	mitochondrion	40.61	43.98
TraesCS2B01G201800.1	Wheat	mitochondrion	40.42	43.78
HORVU2Hr1G032910.2	Barley	plastid	40.42	42.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BKZ4	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc03g114920.1	EnsemblPlants:Solyc03g114920.1.1	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027685AA	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein PNM1, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G60960) UniProtKB/Swiss-Prot;Acc:Q9FME4]

Coordinates

chr3:-:64782248..64783816

Molecular Weight (calculated)

59362.6 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.404

Length

522 amino acids

Sequence
(BLAST)

001: MRRITTPSTI RTLLRRCISS SATNQTHHLP CSQISLSKTH FFTSPLPHYD SFSFSHYSTS FRSFSSQSGR DQEETTAQSL SSELVKELDA ESLSIPQSLD
101: LSFSHVNLTP SLILTTLNLS PDAGRTVLGF FKWVKSKESF KVDDEVVSCF VDYFGRRKDF KAAQDVLIDG IGLTGRKTLE SMVDRLVRAG RPTQTVAFFE
201: NMEKDYGLAR DLDSLKLVVS RLCEHGFASY AEKMVKSLAC EFFPDEYICD MLVRGWCIDG KLDEAQRLAG EMYRGGFEIG ASAYNAILDC VCKLCRKKDP
301: FRLQSEAENV LLEMEEKGVP RDVETFNVLI TNLCKIRKTE DALNLFYRMG EWGCNPDETT FLTLIRSLYQ AARVGEGDEM IDRMRSAGFG DALDKKAYYE
401: FLKILCGIER LDHAMSVFAK MKEDGCKPGL KTYDLLIGKM VAHNRVDKAN ALYKEAESND LAVEPKAYMV HPKYAKKKSA PAKKEEKKRE TFPEKMARKR
501: TKLKKIRLSY VKKPKKMARR AF

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.