Factsheet for Os07t0603900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0106700-01
Os03t0729100-01
Os11t0175700-00
Os12t0173300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	Os03t0729100-01	AT1G44920.1	21297037
AT5G60960.1	Os11t0175700-00	AT1G58100.1	21297037
AT5G60960.1	Os12t0173300-00	AT1G58100.1	21297037
AT5G60960.1	Os02t0106700-01	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97500	Sorghum	mitochondrion	87.65	88.02
TraesCS2A01G175500.1	Wheat	mitochondrion	84.98	85.68
TraesCS2B01G201800.1	Wheat	mitochondrion	84.77	85.48
TraesCS2D01G182800.1	Wheat	mitochondrion	84.77	85.48
Zm00001d006822_P001	Maize	mitochondrion	84.98	85.33
HORVU2Hr1G032910.2	Barley	plastid	84.16	81.96
GSMUA_Achr2P06230_001	Banana	mitochondrion	60.49	57.31
Bra012992.1-P	Field mustard	mitochondrion	46.71	44.08
KRG92684	Soybean	mitochondrion, plastid	45.88	43.81
KRH34092	Soybean	mitochondrion	45.88	43.81
VIT_17s0000g05090.t01	Wine grape	mitochondrion	47.12	43.05
Solyc03g114920.1.1	Tomato	mitochondrion	45.47	42.34
PGSC0003DMT400063323	Potato	mitochondrion	45.06	42.03
AT5G60960.1	Thale cress	plastid	44.65	41.65
Os10t0422300-00	Rice	mitochondrion	21.81	22.08

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.1	EntrezGene:4343842	EMBL:AK063924	ProteinID:BAC83868.1	ProteinID:BAC84486.1
ProteinID:BAF22131.1	ProteinID:BAT02545.1	ProteinID:EAZ40577.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os07g0603900	EnsemblPlants:Os07t0603900-01
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF831
InterPro:Pentatricopeptide_repeat	UniProt:Q6YVW1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00001BF4A3	RefSeq:XP_015647998.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os07t0603900-01)

Coordinates

chr7:+:24724562..24728092

Molecular Weight (calculated)

53717.7 Da

IEP (calculated)

10.772

GRAVY (calculated)

-0.200

Length

486 amino acids

Sequence
(BLAST)

001: MWRRHLLRRL LPSPATAAAA AASPSPAIRL LSTASPDPAP PATLASSLAG ALSALSSTPP PATSPDAYFS LHFSDVRPTN ALLAEALALA PPATSRAAAE
101: LFRFLVRRRS LHPSDSALAP VVRHLARRRD FPAVRSLVQE FPSALGHDTL DAYLLSLARA GRATDAVKVF DELPPQLRTR QALTSLVSSL SAEGWPSHAE
201: GAVKKVANEI FPDDNICTLL VSGYANAGKL DHALRLIGET RRGGFQPGLD AYNAVLDCIC RLCRKKDPLR MPAEAEKFLV DMEANGIPRD AGTFRVLITN
301: LCKIRKTEDA MNLFRRMGEW GCSPDADTYL VLIKSLYQAA RISEGDEMMT WMRSAGFGAK LDRKAYYGFI KILCGIERVE HAVKVFRMMK GYGHAPGTKS
401: YSLLIEKLTR HNLGDRANAL FREAVARGVT VTPGVYKIDK KYVKAKKEKK VKKRLTLPEK MRLKSKRLYK LRMSFVKKPK RRMVRV

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.