Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os07t0603900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44920.1 | Os07t0603900-01 | AT5G60960.1 | 21297037 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031553_P001 | Maize | endoplasmic reticulum, extracellular | 34.25 | 75.0 |
| Zm00001d033873_P001 | Maize | plastid | 73.97 | 62.07 |
| EER90941 | Sorghum | plastid | 73.06 | 60.15 |
| TraesCS4B01G059400.1 | Wheat | plastid | 68.04 | 56.02 |
| TraesCS4D01G059100.1 | Wheat | plastid | 67.12 | 54.85 |
| TraesCS4A01G255600.1 | Wheat | plastid | 65.75 | 54.55 |
| KRH15453 | Soybean | extracellular, golgi, plastid | 20.55 | 49.45 |
| VIT_18s0001g08630.t01 | Wine grape | plastid | 53.88 | 45.38 |
| GSMUA_Achr4P07390_001 | Banana | plastid | 53.88 | 44.36 |
| CDY47956 | Canola | plastid | 49.32 | 42.86 |
| AT1G44920.1 | Thale cress | mitochondrion, plastid | 48.4 | 41.09 |
| CDY12577 | Canola | mitochondrion, plastid | 50.23 | 41.04 |
| KRH05538 | Soybean | plastid | 47.49 | 38.81 |
| Solyc04g077500.2.1 | Tomato | plastid | 49.32 | 37.63 |
| Bra041008.1-P | Field mustard | mitochondrion, plastid | 49.77 | 36.82 |
| PGSC0003DMT400012587 | Potato | plastid | 47.03 | 35.89 |
Protein Annotations
| EnsemblPlants:Os03t0729100-01 | EnsemblPlantsGene:Os03g0729100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF3054 | PANTHER:PTHR35283 |
| PFAM:PF11255 | ProteinID:BAS86199.1 | SEG:seg | UniParc:UPI0002249852 | UniProt:A0A0P0W2V6 | MapMan:35.2 |
Description
Protein of unknown function DUF3054 domain containing protein. (Os03t0729100-01)
Coordinates
chr3:-:29788494..29791241
Molecular Weight (calculated)
22853.6 Da
IEP (calculated)
5.187
GRAVY (calculated)
0.394
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSPRGGCP PSSPSGSPAT TTATEDPVLV GVTDEGVPLE GVIQFDKPGD AAAESKLVSY AKLGLLASGD VLCLLVFSAI GRFSHGLPVL DAETFKTADP
101: FIAGWLLSAY LLGGFGDDAK GRNGVGNAVV VAAKSWAVGI PLGLAIRALS SGHIPPTPFI LVAMGSTWVL LTGWRALVSL LFSTGQSQQD DVYRRGSPFE
201: LFEVKKVLQI IGIFFYTCN
101: FIAGWLLSAY LLGGFGDDAK GRNGVGNAVV VAAKSWAVGI PLGLAIRALS SGHIPPTPFI LVAMGSTWVL LTGWRALVSL LFSTGQSQQD DVYRRGSPFE
201: LFEVKKVLQI IGIFFYTCN
001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
Arabidopsis Description
T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.