CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plasma membrane, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92684
KRH34092

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44920.1	KRG92684	AT5G60960.1	21297037
AT1G44920.1	KRH34092	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15453	Soybean	extracellular, golgi, plastid	31.34	92.31
VIT_18s0001g08630.t01	Wine grape	plastid	55.97	57.69
Zm00001d031553_P001	Maize	endoplasmic reticulum, extracellular	19.78	53.0
CDY47956	Canola	plastid	49.63	52.78
AT1G44920.1	Thale cress	mitochondrion, plastid	50.0	51.94
CDY12577	Canola	mitochondrion, plastid	48.88	48.88
Os03t0729100-01	Rice	plastid	38.81	47.49
PGSC0003DMT400012587	Potato	plastid	50.37	47.04
Solyc04g077500.2.1	Tomato	plastid	50.37	47.04
Zm00001d033873_P001	Maize	plastid	45.52	46.74
EER90941	Sorghum	plastid	46.27	46.62
GSMUA_Achr4P07390_001	Banana	plastid	45.9	46.24
TraesCS4D01G059100.1	Wheat	plastid	45.52	45.52
TraesCS4A01G255600.1	Wheat	plastid	44.78	45.45
Bra041008.1-P	Field mustard	mitochondrion, plastid	48.13	43.58
TraesCS4B01G059400.1	Wheat	plastid	42.91	43.23

Protein Annotations

EMBL:ACUP02010750	EMBL:BT096330	EnsemblPlants:KRH05538	EnsemblPlantsGene:GLYMA_17G232300	EntrezGene:100790514	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF3054	PANTHER:PTHR35283	PFAM:PF11255	ProteinID:KRH05538
ProteinID:KRH05538.1	ProteinID:KRH05539.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B1661A	UniProt:C6TFE3
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:38753545..38757581

Molecular Weight (calculated)

28811.8 Da

IEP (calculated)

9.159

GRAVY (calculated)

0.263

Length

268 amino acids

Sequence
(BLAST)

001: MILVSHIQAP CVGAMFSKCC SLLSLPKFIT VTNPPTFSNP VPNFITRRIS STRPFHLTLA KAEGNLDSDS PSTSTSSPSP SPFATDQTVF VTGKDVPLEG
101: VIQFEKPASS PPFEKWGRVA LLAGADVLAL FVFSTIGRYS HGLSVLDLET LRTADPFIAG WFLGAYFLGG FGEDGRGMNG LSKGVVATAK SWAVGIPIGI
201: VIKAATSGHL PNYGFVFVSL GSTAVLLVTF RALLYTILPV DNSKKSDDYR RGSPFELFEL LTSLVRRW

Best Arabidopsis Sequence Match ( AT1G44920.1 )
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW

Arabidopsis Description

T12C22.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPD7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.