CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02690
KRH05538
KRH06094
KRH12415
KRH15453
KRH16939
KRH19202
KRH37411
KRH53668
KRH64260
KRH72573

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60960.1	KRH05538	AT1G44920.1	21297037
AT5G60960.1	KRH15453	AT1G44920.1	21297037
AT5G60960.1	KRH06094	AT1G58100.1	21297037
AT5G60960.1	KRH02690	AT4G26110.1	21297037
AT5G60960.1	KRH12415	AT4G26110.1	21297037
AT5G60960.1	KRH19202	AT4G26110.1	21297037
AT5G60960.1	KRH37411	AT4G26110.1	21297037
AT5G60960.1	KRH16939	AT5G24680.1	21297037
AT5G60960.1	KRH53668	AT5G24680.1	21297037
AT5G60960.1	KRH64260	AT5G24680.1	21297037
AT5G60960.1	KRH72573	AT5G24680.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34092	Soybean	mitochondrion	84.28	84.28
VIT_17s0000g05090.t01	Wine grape	mitochondrion	63.85	61.09
PGSC0003DMT400063323	Potato	mitochondrion	61.49	60.08
Bra012992.1-P	Field mustard	mitochondrion	60.51	59.81
Solyc03g114920.1.1	Tomato	mitochondrion	61.3	59.77
AT5G60960.1	Thale cress	plastid	60.31	58.93
GSMUA_Achr2P06230_001	Banana	mitochondrion	48.72	48.34
Zm00001d006822_P001	Maize	mitochondrion	44.79	47.11
EER97500	Sorghum	mitochondrion	44.6	46.9
TraesCS2D01G182800.1	Wheat	mitochondrion	43.61	46.06
Os07t0603900-01	Rice	mitochondrion	43.81	45.88
TraesCS2A01G175500.1	Wheat	mitochondrion	43.42	45.85
TraesCS2B01G201800.1	Wheat	mitochondrion	43.42	45.85
HORVU2Hr1G032910.2	Barley	plastid	44.01	44.89
KRH03514	Soybean	mitochondrion	22.4	23.27
KRH56887	Soybean	mitochondrion	20.43	22.96

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808101	MapMan:17.7.1.3.1	EMBL:ACUP02012766	EnsemblPlantsGene:GLYMA_20G225100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	UniProt:I1NIQ8	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG92684	ProteinID:KRG92684
ProteinID:KRG92684.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF831	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233DD13	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:45944467..45949100

Molecular Weight (calculated)

57673.2 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.330

Length

509 amino acids

Sequence
(BLAST)

001: MPPLAPLHLR KLLLRSRSLS FTSPTPIHPP PLFPQQPSSH FHSRTLLTPS SLFIIRHFSS ETQTDQIAHS LSSELLKEPD SDALSVSQRL HLSFSHITPT
101: PNLILQTLNL SHESGRTVLG FHQWLSSNPQ FSHTDDTLSY FVDYFGRRKD FKATHDVLSA ASPAAGPKTL ASAIDRLVRA GRPSQAVQFF ERMERDYGLK
201: RDRASLKVVV EKLCSKGFAS YAEKMVKDLA KVFFPDEATC DMLIKGWCVD GKLDEAQRLA GEMYRGGFEL GVGSYNAMLD CVCKLCRQKD PFQLHSEAEK
301: VLVEMEHRGV PRNVETFNVL ITNLCKIRKT EDALGLFRSM GEWGCYPNET TFLVLIRSLY QAARLEEGDE MIDRMRSAGF GEFLDKKAYY QLLKILCGIE
401: RVDHALSVFA MMKDGGCEPG LITYDLLMGK LGAHNRIDKA NALFNEAKSR GLPVMLKEYA VDPRYLKKKK VVKGVKKRET LPEKMARKRS RLKQIRLSFV
501: KKPKRVMGR

Best Arabidopsis Sequence Match ( AT5G60960.1 )
(BLAST)

001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M

Arabidopsis Description

PNM1PNM1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.