CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16939	Soybean	cytosol	56.61	77.71
KRH53668	Soybean	cytosol	54.99	60.77
VIT_16s0098g00580.t01	Wine grape	cytosol	53.6	53.1
KRH64260	Soybean	cytosol	36.66	50.97
TraesCS6B01G032700.1	Wheat	cytosol	47.8	50.0
OQU84154	Sorghum	nucleus	47.8	49.88
GSMUA_Achr6P36850_001	Banana	cytosol	46.87	49.63
TraesCS6D01G027400.1	Wheat	cytosol	46.87	49.03
Zm00001d014950_P002	Maize	cytosol	46.87	48.91
HORVU6Hr1G004180.9	Barley	nucleus	46.87	48.91
AT5G24680.1	Thale cress	extracellular	45.01	48.62
CDX88128	Canola	cytosol	45.01	48.62
Zm00001d054072_P002	Maize	cytosol	48.26	48.48
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	43.39	47.1
PGSC0003DMT400069227	Potato	cytosol	45.94	47.03
TraesCS6A01G024000.1	Wheat	cytosol	46.64	46.74
CDX80465	Canola	cytosol	43.62	46.65
Solyc06g072970.2.1	Tomato	cytosol	45.48	46.34
Os02t0106700-01	Rice	cytosol, plastid	48.49	43.0
HORVU0Hr1G014940.1	Barley	cytosol	36.19	40.31

Protein Annotations

EMBL:ACUP02001223	EnsemblPlants:KRH72573	EnsemblPlantsGene:GLYMA_02G220600	EntrezGene:100789113	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2
PANTHER:PTHR44681	PFAM:PF07910	ProteinID:KRH72573	ProteinID:KRH72573.1	ProteinID:KRH72574.1	SEG:seg
UniParc:UPI000296B2A4	UniProt:K7KA31	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:40851207..40853780

Molecular Weight (calculated)

48790.6 Da

IEP (calculated)

7.911

GRAVY (calculated)

-0.539

Length

431 amino acids

Sequence
(BLAST)

001: MNMDSATCPF CNLSFPSSQI QWHANTHFDN DDGNYRSPSV SGLHFDATSG DCKSWCGGRN NGAWKMDEKI SCLVDLQRRG EFHKVERGLM ALLRNCLESD
101: GENSRSILSG YVDHFQSIPF EDVGWGCGWR NIQILSSHLL AQRPEAREAM YGGSGFVPDI PSLQRWLEVA WERGFDAPGS DQFNHAIYGS KKWIGATECA
201: ALLRSFGLRV RVVDFGPKES ESLYLSVPSS SVGAKELVRI NDARKRKAPN THGPMDRYMS RAVAQASCSQ DAKPCSSLIR IRDTVDKESS GDRVLNSTER
301: QNEGHRVLMD FVWNYFSHKD TVQFGQRRVL ISDKTPLYFQ HDGHSRTIVG IQVKYQQSGI PQYSLLVMDP GHRTAALERS LREKVGWQKF IKRGVHTLKK
401: QQYQLCYVDP GIASEEEMEK LKTIDSVFLE F

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.