CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16008
CDY21055
CDY26568
CDY58614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	CDY16008	AT1G12520.1	21798944
AT5G24680.1	CDY21055	AT1G12520.1	21798944
AT5G24680.1	CDY26568	AT1G12520.1	21798944
AT5G24680.1	CDY58614	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88128	Canola	cytosol	86.35	87.22
AT5G24680.1	Thale cress	extracellular	75.19	75.94
KRH53668	Soybean	cytosol	45.41	46.92
TraesCS6D01G027400.1	Wheat	cytosol	45.66	44.66
TraesCS6B01G032700.1	Wheat	cytosol	45.41	44.42
HORVU6Hr1G004180.9	Barley	nucleus	45.41	44.31
Zm00001d014950_P002	Maize	cytosol	45.16	44.07
OQU84154	Sorghum	nucleus	44.91	43.83
KRH72573	Soybean	cytosol	46.65	43.62
VIT_16s0098g00580.t01	Wine grape	cytosol	46.4	42.99
PGSC0003DMT400069227	Potato	cytosol	44.66	42.76
Solyc06g072970.2.1	Tomato	cytosol	44.66	42.55
Zm00001d054072_P002	Maize	cytosol	45.16	42.42
TraesCS6A01G024000.1	Wheat	cytosol	44.91	42.09
KRH16939	Soybean	cytosol	32.75	42.04
KRH64260	Soybean	cytosol	32.01	41.61
GSMUA_Achr6P36850_001	Banana	cytosol	41.69	41.28
HORVU0Hr1G014940.1	Barley	cytosol	36.72	38.24
Os02t0106700-01	Rice	cytosol, plastid	44.42	36.83

Protein Annotations

EnsemblPlants:CDX80465	EnsemblPlantsGene:GSBRNA2T00133550001	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
ProteinID:CDX80465	ProteinID:CDX80465.1	SEG:seg	UniParc:UPI0004EF4792	MapMan:35.2	:

Description

BnaC07g29790D

Coordinates

chrLK031821:+:658734..660481

Molecular Weight (calculated)

45246.9 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.374

Length

403 amino acids

Sequence
(BLAST)

001: MSACPVCNLR LPLSQIESHV NAHFEDEIDP QIANDHYLAL QLASSSSSDP PPTLKEAPFL DPFNKIVPFP QNDDVVRSQT KRPFYRVGNG GLISLLTTCL
101: VESKTKPLEC STSLLSGYVD HFQSTKEDKG WGCGWRNIQM QCSHLLSRRD QEVKRVLFGG SEFVPDIPSL QRWLEIAWRS GFDVSGGLHF DKRIYGCKKW
201: IGTTECAALL RSFGLRARVV DFAPEKSRSM YLSVPGSAVA PKRRAYGPMD RYVVKKGASG VEKGVDSRGS TSSRIGKGAV LMDWVWNYFS DNRLDVSSGV
301: HMTNKGPLYF QHEGHSRTIV GIQRRLQGTT FTPQYNLLIL DPADFTRDIE KALVDKKGWE GYLKRGAHTL TCPEYQMLYV DNGIAVGEEL EQLKTIDSHF
401: VQF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.