Factsheet for TraesCS6A01G024000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G399000.1
TraesCS2B01G417000.1
TraesCS2D01G396500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	TraesCS2A01G399000.1	AT1G12520.1	21798944
AT5G24680.1	TraesCS2B01G417000.1	AT1G12520.1	21798944
AT5G24680.1	TraesCS2D01G396500.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G032700.1	Wheat	cytosol	92.09	96.12
TraesCS6D01G027400.1	Wheat	cytosol	90.93	94.9
HORVU6Hr1G004180.9	Barley	nucleus	85.81	89.35
HORVU0Hr1G014940.1	Barley	cytosol	72.33	80.36
Zm00001d014950_P002	Maize	cytosol	65.58	68.28
OQU84154	Sorghum	nucleus	64.19	66.83
Zm00001d054072_P002	Maize	cytosol	65.81	65.97
Os02t0106700-01	Rice	cytosol, plastid	65.81	58.23
GSMUA_Achr6P36850_001	Banana	cytosol	50.23	53.07
KRH16939	Soybean	cytosol	37.91	51.91
KRH53668	Soybean	cytosol	46.98	51.79
VIT_16s0098g00580.t01	Wine grape	cytosol	49.53	48.97
PGSC0003DMT400069227	Potato	cytosol	46.98	47.98
Solyc06g072970.2.1	Tomato	cytosol	46.74	47.52
KRH72573	Soybean	cytosol	46.74	46.64
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	43.02	46.6
CDX88128	Canola	cytosol	43.02	46.37
AT5G24680.1	Thale cress	extracellular	42.09	45.36
CDX80465	Canola	cytosol	42.09	44.91
KRH64260	Soybean	cytosol	31.86	44.19

Protein Annotations

EnsemblPlants:TraesCS6A01G024000.1	EnsemblPlantsGene:TraesCS6A01G024000	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:11963972..11966414

Molecular Weight (calculated)

48230.3 Da

IEP (calculated)

7.962

GRAVY (calculated)

-0.468

Length

430 amino acids

Sequence
(BLAST)

001: MISSCPICGH QVLTAELERH ANSHFDDDEV QRDMELAQLA MAAELSTSTV VDVPQHSKRP FPNDDSLAQG ASSSIIRGPS PYENVLYEQI TCLVGAQVRS
101: EIQRIEAGVM NLLRSCLESE GGSSTSIISG HVDHHQSLSS EDKGWGCGWR NIQMMSSHLL RQRPETREVL FGGCGFIPDI PSLQRWLEIA WDKGFDAVGA
201: SHFDSKIYGV KKWIGTSECV TLLRSFGVRA RIVDFDSTES SSLHGKSGKR VCGPMDKYLI KTSPPPRSST CELSQEDAEN MRGQQVLVDW VWNYFSSKRA
301: DMLHNSKNVI ISDKTPLYFQ HQGHSRTIVG IQKQKGNRGS QDRYNLLVLD PRHRTADLER SLTTKKGWQR LLKRGVHTLR KPQYQLCYVD PGIASSEETE
401: QLKTIDSILI RVGGSESTIY TKKRAFVHVL

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.