CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU82186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	OQU82186	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014950_P002	Maize	cytosol	86.92	86.92
Zm00001d054072_P002	Maize	cytosol	88.38	85.08
TraesCS6B01G032700.1	Wheat	cytosol	67.31	67.48
HORVU6Hr1G004180.9	Barley	nucleus	67.31	67.31
TraesCS6D01G027400.1	Wheat	cytosol	66.83	66.99
TraesCS6A01G024000.1	Wheat	cytosol	66.83	64.19
Os02t0106700-01	Rice	cytosol, plastid	73.12	62.14
HORVU0Hr1G014940.1	Barley	cytosol	55.21	58.91
GSMUA_Achr6P36850_001	Banana	cytosol	51.57	52.33
KRH16939	Soybean	cytosol	39.71	52.23
KRH53668	Soybean	cytosol	48.18	51.03
PGSC0003DMT400069227	Potato	cytosol	51.33	50.36
Solyc06g072970.2.1	Tomato	cytosol	51.09	49.88
VIT_16s0098g00580.t01	Wine grape	cytosol	51.33	48.74
KRH72573	Soybean	cytosol	49.88	47.8
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	44.31	46.1
CDX88128	Canola	cytosol	44.07	45.61
CDX80465	Canola	cytosol	43.83	44.91
AT5G24680.1	Thale cress	extracellular	43.1	44.61
KRH64260	Soybean	cytosol	32.45	43.23

Protein Annotations

EnsemblPlants:OQU84154	EnsemblPlantsGene:SORBI_3004G005100	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
ProteinID:EES04335.2	ProteinID:OQU84154	ProteinID:OQU84154.1	SEG:seg	UniParc:UPI0007F1D1B0	UniProt:C5XRK5
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:438745..443798

Molecular Weight (calculated)

46656.0 Da

IEP (calculated)

6.975

GRAVY (calculated)

-0.542

Length

413 amino acids

Sequence
(BLAST)

001: METISSCPIC NIQVLTVELE WHANSHFDDD QLQRDMELAH QMALAESSTD TMNDPKRYSG SFTSDSNTLG ASSSHSGYSR HHSELLDEQI SCLVRAQIRS
101: EVQEVEGGIM SLLKSCLESE DGSSTCMISC YIDHHQSLSS EDKGWGCGWR NIQMLSSHLL KQRPEAREVL FGGSGFVPDI PSLQRWLEIA WDKNFDKIGS
201: SHFHNEVYGA KKWIGAAECA TLFRSFGLRA RVVDFDSTES SDLQSKNGSR AASQVRGPMD KFLTKNDSPK SSSELCREDA ESMRGQQALV DWVWNYFASG
301: RSDRLATQRV TVSNKTPLYF QHQGHSRTIV GIQKKMAHRG FHEQYSLLIL DPGHRTAELE RSLRSKKGWQ RLVKRGVHTL RKPQYQLCYV DPGIATSEEM
401: EQLKIIAGIL VRF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.