Factsheet for Bra009788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016768.1-P
Bra026968.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	Bra016768.1-P	AT1G12520.1	21798944
AT5G24680.1	Bra026968.1-P	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88128	Canola	cytosol	96.47	95.99
AT5G24680.1	Thale cress	extracellular	76.83	76.44
KRH53668	Soybean	cytosol	46.1	46.92
TraesCS6D01G027400.1	Wheat	cytosol	47.61	45.87
TraesCS6B01G032700.1	Wheat	cytosol	47.1	45.39
HORVU6Hr1G004180.9	Barley	nucleus	46.6	44.79
Zm00001d014950_P002	Maize	cytosol	46.35	44.55
OQU84154	Sorghum	nucleus	46.1	44.31
KRH72573	Soybean	cytosol	47.1	43.39
KRH16939	Soybean	cytosol	34.26	43.31
TraesCS6A01G024000.1	Wheat	cytosol	46.6	43.02
Zm00001d054072_P002	Maize	cytosol	46.35	42.89
PGSC0003DMT400069227	Potato	cytosol	44.84	42.28
VIT_16s0098g00580.t01	Wine grape	cytosol	45.59	41.61
GSMUA_Achr6P36850_001	Banana	cytosol	42.57	41.52
Solyc06g072970.2.1	Tomato	cytosol	44.08	41.37
KRH64260	Soybean	cytosol	32.24	41.29
HORVU0Hr1G014940.1	Barley	cytosol	38.54	39.53
Os02t0106700-01	Rice	cytosol, plastid	45.84	37.45

Protein Annotations

EnsemblPlants:Bra009788.1	EnsemblPlants:Bra009788.1-P	EnsemblPlantsGene:Bra009788	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681
PFAM:PF07910	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000253F261	UniProt:M4CZZ1	MapMan:35.2

Description

AT5G24680 (E=7e-169) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 (InterPro:IPR012462); Has 157 Blast hits to 157 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 45; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Coordinates

chrA06:+:17267498..17268980

Molecular Weight (calculated)

44461.0 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.329

Length

397 amino acids

Sequence
(BLAST)

001: MLLFTSIPIL LTRLFLSHVN SHFDDDEIDP RIASDHYLAL QLASDPSSST PKEAPFLDPL NKTVPFASLA RSQTKSPFHI VENGGLICLL KTCLESKTKP
101: LESNTSLLSG YVDHFQSTKE DKGWGCGWRN IQMQCSHLLS RRDQEVKRVL FGGSEFVPDI PSLQRWLELA WRSGFDVSGG LHFDKRIYGC KKWIGTTECA
201: ALLRSFGLRA RVVDFAPEKS RSMYLSVPGS AVAPKRRGYG PMDRYVVRKG GSGVEKGGDS LGSSSSSRTS KGAVLMEWVW NYFSDNRLDV SSGVHITNKG
301: PLYFQHEGHS RTIVGIQRRL QGTTFTPQYN LLILDPADFT RGIEKALVDK RGWEGYLKRG AHSLTCPEYQ MLYVDNGIAV GEELEQLKTI DSHFVEF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.