CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64260	Soybean	cytosol	64.62	81.29
KRH16939	Soybean	cytosol	45.64	56.69
KRH72573	Soybean	cytosol	60.77	54.99
GSMUA_Achr6P36850_001	Banana	cytosol	51.54	49.39
TraesCS6D01G027400.1	Wheat	cytosol	52.05	49.27
VIT_16s0098g00580.t01	Wine grape	cytosol	54.87	49.2
Zm00001d014950_P002	Maize	cytosol	52.05	49.15
TraesCS6B01G032700.1	Wheat	cytosol	51.79	49.03
HORVU6Hr1G004180.9	Barley	nucleus	51.28	48.43
OQU84154	Sorghum	nucleus	51.03	48.18
Zm00001d054072_P002	Maize	cytosol	52.31	47.55
AT5G24680.1	Thale cress	extracellular	48.46	47.37
TraesCS6A01G024000.1	Wheat	cytosol	51.79	46.98
CDX88128	Canola	cytosol	47.69	46.62
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	46.92	46.1
CDX80465	Canola	cytosol	46.92	45.41
Solyc06g072970.2.1	Tomato	cytosol	47.44	43.74
PGSC0003DMT400069227	Potato	cytosol	47.18	43.71
Os02t0106700-01	Rice	cytosol, plastid	51.79	41.56
HORVU0Hr1G014940.1	Barley	cytosol	40.51	40.83

Protein Annotations

EMBL:ACUP02003480	EnsemblPlants:KRH53668	EnsemblPlantsGene:GLYMA_06G139400	EntrezGene:100781936	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2
PANTHER:PTHR44681	PFAM:PF07910	ProteinID:KRH53668	ProteinID:KRH53668.1	SEG:seg	UniParc:UPI0002339788
UniProt:K7KUY3	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11370986..11374218

Molecular Weight (calculated)

43833.9 Da

IEP (calculated)

6.818

GRAVY (calculated)

-0.370

Length

390 amino acids

Sequence
(BLAST)

001: MNSDSFVSCP FCDSHVPLSQ RTGHFKTHFW DLGNDFDLPP VSQSQSQSLP REQAANGSRS GANYSCGGET NSDNGECKVN EKISCLIGSQ TRSNFYKVEG
101: GLMALLRCCL ESEVGNSYSI LSGYVDHFQC LESVDAGWGC GWRNIQMLCS HLLVQRPEAR KALFCGSGFV PDILSLQRWL EIAWEKGFDA PGSAQFNHVI
201: WGSKEWIGTT ECAALLRSFA LQARVVDFGP KDSQSLTGSS VDDMMDKASI HNMVKRKAEK SKGYQVLMDF VWNYFSDKSS IQFGQQHVVI SEKTPLYFQH
301: DGHSRTIVGI QVNRQQKGHL QYNLLVLDPA HSTDALERSL RLRVGWEKLI KRGMHTLKKP QYQLCYVDPG IASEEEMEKL KTIDSVFLEF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.