Factsheet for TraesCS6D01G027400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G399000.1
TraesCS2B01G417000.1
TraesCS2D01G396500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	TraesCS2A01G399000.1	AT1G12520.1	21798944
AT5G24680.1	TraesCS2B01G417000.1	AT1G12520.1	21798944
AT5G24680.1	TraesCS2D01G396500.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G032700.1	Wheat	cytosol	94.66	94.66
TraesCS6A01G024000.1	Wheat	cytosol	94.9	90.93
HORVU6Hr1G004180.9	Barley	nucleus	90.78	90.56
HORVU0Hr1G014940.1	Barley	cytosol	76.7	81.65
Zm00001d014950_P002	Maize	cytosol	68.69	68.52
OQU84154	Sorghum	nucleus	66.99	66.83
Zm00001d054072_P002	Maize	cytosol	69.17	66.43
Os02t0106700-01	Rice	cytosol, plastid	69.42	58.85
GSMUA_Achr6P36850_001	Banana	cytosol	52.67	53.32
KRH16939	Soybean	cytosol	39.81	52.23
KRH53668	Soybean	cytosol	49.27	52.05
VIT_16s0098g00580.t01	Wine grape	cytosol	51.94	49.2
PGSC0003DMT400069227	Potato	cytosol	49.27	48.22
Solyc06g072970.2.1	Tomato	cytosol	49.03	47.75
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	45.87	47.61
CDX88128	Canola	cytosol	45.87	47.37
KRH72573	Soybean	cytosol	49.03	46.87
AT5G24680.1	Thale cress	extracellular	44.66	46.12
CDX80465	Canola	cytosol	44.66	45.66
KRH64260	Soybean	cytosol	33.74	44.84

Protein Annotations

EnsemblPlants:TraesCS6D01G027400.1	EnsemblPlantsGene:TraesCS6D01G027400	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:10414191..10417613

Molecular Weight (calculated)

46223.9 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.475

Length

412 amino acids

Sequence
(BLAST)

001: MISSCPICGH QVLTAELERH ANSHFDDDEV QRDMELAQLA MAAELSTSTV VDVPQHSKRP FPNDDSLAQG ASSSIVRGPS PYENVLYEQI SCLVGAQVRS
101: KIQRIEAGVM NLLRSCLESE GGSSTSIISG HVDHHQSLSS EDKGWGCGWR NIQMMSSHLL RQRPETREVL FGGCGFVPDI PSLQRWLEIA WDKGFDAVGA
201: RHFDSKIYGV KKWIGTSECV TLLRSFGVRA RIVDFDSTES SSLQGKSGKR VCGPMDKYLI KTNPLPRSSS LELSQEDAEN MRGQQVLVDW VWNYFSSKRA
301: DVLHNSKNVI ISDKTPLYFQ HQGHSRTIVG IQKQKGNRGS QDRYNLLVLD PGHRTADLER SLTTKKGWPR LLKRGVHTLR KPQYQLCYVD PGIANSEETE
401: QLKTIDSILI RF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.