Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G094650.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24680.1 | HORVU2Hr1G094650.1 | AT1G12520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G004180.9 | Barley | nucleus | 89.66 | 84.02 |
| TraesCS6D01G027400.1 | Wheat | cytosol | 81.65 | 76.7 |
| TraesCS6B01G032700.1 | Wheat | cytosol | 80.62 | 75.73 |
| TraesCS6A01G024000.1 | Wheat | cytosol | 80.36 | 72.33 |
| Zm00001d014950_P002 | Maize | cytosol | 60.21 | 56.42 |
| OQU84154 | Sorghum | nucleus | 58.91 | 55.21 |
| Zm00001d054072_P002 | Maize | cytosol | 60.47 | 54.55 |
| Os02t0106700-01 | Rice | cytosol, plastid | 59.95 | 47.74 |
| KRH64260 | Soybean | cytosol | 35.14 | 43.87 |
| GSMUA_Achr6P36850_001 | Banana | cytosol | 44.7 | 42.51 |
| KRH53668 | Soybean | cytosol | 40.83 | 40.51 |
| PGSC0003DMT400069227 | Potato | cytosol | 43.41 | 39.91 |
| VIT_16s0098g00580.t01 | Wine grape | cytosol | 44.7 | 39.77 |
| Solyc06g072970.2.1 | Tomato | cytosol | 43.41 | 39.72 |
| Bra009788.1-P | Field mustard | cytosol, endoplasmic reticulum | 39.53 | 38.54 |
| KRH16939 | Soybean | cytosol | 31.27 | 38.53 |
| CDX88128 | Canola | cytosol | 39.53 | 38.35 |
| AT5G24680.1 | Thale cress | extracellular | 39.28 | 38.1 |
| CDX80465 | Canola | cytosol | 38.24 | 36.72 |
| KRH72573 | Soybean | cytosol | 40.31 | 36.19 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G014940.1 | EnsemblPlantsGene:HORVU0Hr1G014940 | Gene3D:3.90.70.130 | InterPro:Peptidase_C78_UfSP1/2 | ncoils:Coil | PANTHER:PTHR44681 |
| PFAM:PF07910 | SEG:seg | UniParc:UPI000B473349 | UniProt:A0A287E1R5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchrUn:+:82954220..82956017
Molecular Weight (calculated)
39433.6 Da
IEP (calculated)
6.641
GRAVY (calculated)
-0.442
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MISSCPICGH QVLTAELERH ANSHFEDDEV QRDMELAQLA MAAELSTSTV VDVHEHSKRP FPDDDYLSPG ASSSIIRGPS SYGKLLDEQI SCLVGAQVRS
101: EIQRIEGGVM NLLRSCLESE GGSSTSIISG YVDHHQSLSS EDKGWGCGWR NIQMMSSHLL KQRAETREAL FGGCGFVPDI PSLQRWLEIA WDKGFDTLGA
201: SHFDNKIYGV KKWIGTSECV TLLRSFGVRA RIVDFDSTES SSLQGKSGKR VCGPMDKYLV KTNPPPRSSP CELSQEDAEN MRGQQVLVDW VWNYFSSKRA
301: DMLHNSKNVI VSDKTPLYFQ HQGHSRTIIG IQKQKGNRGS QDQYNLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LYILQKN
101: EIQRIEGGVM NLLRSCLESE GGSSTSIISG YVDHHQSLSS EDKGWGCGWR NIQMMSSHLL KQRAETREAL FGGCGFVPDI PSLQRWLEIA WDKGFDTLGA
201: SHFDNKIYGV KKWIGTSECV TLLRSFGVRA RIVDFDSTES SSLQGKSGKR VCGPMDKYLV KTNPPPRSSP CELSQEDAEN MRGQQVLVDW VWNYFSSKRA
301: DMLHNSKNVI VSDKTPLYFQ HQGHSRTIIG IQKQKGNRGS QDQYNLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LYILQKN
001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF
Arabidopsis Description
Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.