Factsheet for HORVU6Hr1G004180.9

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G094650.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	HORVU2Hr1G094650.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G027400.1	Wheat	cytosol	90.56	90.78
TraesCS6B01G032700.1	Wheat	cytosol	89.83	90.05
HORVU0Hr1G014940.1	Barley	cytosol	84.02	89.66
TraesCS6A01G024000.1	Wheat	cytosol	89.35	85.81
Zm00001d014950_P002	Maize	cytosol	69.25	69.25
OQU84154	Sorghum	nucleus	67.31	67.31
Zm00001d054072_P002	Maize	cytosol	69.49	66.9
Os02t0106700-01	Rice	cytosol, plastid	68.77	58.44
GSMUA_Achr6P36850_001	Banana	cytosol	52.3	53.07
KRH16939	Soybean	cytosol	40.19	52.87
KRH53668	Soybean	cytosol	48.43	51.28
PGSC0003DMT400069227	Potato	cytosol	50.12	49.17
VIT_16s0098g00580.t01	Wine grape	cytosol	51.57	48.97
Solyc06g072970.2.1	Tomato	cytosol	50.12	48.94
KRH72573	Soybean	cytosol	48.91	46.87
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	44.79	46.6
CDX88128	Canola	cytosol	44.79	46.37
AT5G24680.1	Thale cress	extracellular	44.79	46.37
CDX80465	Canola	cytosol	44.31	45.41
KRH64260	Soybean	cytosol	33.17	44.19

Protein Annotations

EnsemblPlants:HORVU6Hr1G004180.9	EnsemblPlantsGene:HORVU6Hr1G004180	Gene3D:3.90.70.130	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Peptidase_C78_UfSP1/2	InterPro:Znf_C2H2_type	PANTHER:PTHR44681	PFAM:PF07910	ScanProsite:PS00028
SEG:seg	UniParc:UPI0002956614	UniProt:M0ZBV5	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr6H:-:9307172..9313301

Molecular Weight (calculated)

46342.9 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.506

Length

413 amino acids

Sequence
(BLAST)

001: MISSCPICGH QVLTAELERR HANSHFEDDE VQRDMELAQL AMAAELSTST VVDVHEHSKR PFPDDDYLSP GASSSIIRGP SSYGKLLDEQ ISCLVGAQVR
101: SEIQRIEGGV MNLLRSCLES EGGSSTSIIS GYVDHHQSLS SEDKGWGCGW RNIQMMSSHL LKQRAETREA LFGGCGFVPD IPSLQRWLEI AWDKGFDTLG
201: ASHFDNKIYG VKKWIGTSEC VTLLRSFGVR ARIVDFDSTE SSSLQGKSGK RVCGPMDKYL VKTNPPPRSS PCELSQEDAE NMRGQQVLVD WVWNYFSSKR
301: ADMLHNSKNV IVSDKTPLYF QHQGHSRTII GIQKQKGNRG SQDQYNLLVL DPGHRTADLE TSLTTKKGWQ RHLKRGVHTL RKPQYQLCYV EPGIASSEEI
401: ERLKTIDSIL IRF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.