Factsheet for GSMUA_Achr6P36850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P24900_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	GSMUA_Achr4P24900_001	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014950_P002	Maize	cytosol	53.56	52.78
TraesCS6D01G027400.1	Wheat	cytosol	53.32	52.67
HORVU6Hr1G004180.9	Barley	nucleus	53.07	52.3
OQU84154	Sorghum	nucleus	52.33	51.57
KRH53668	Soybean	cytosol	49.39	51.54
TraesCS6B01G032700.1	Wheat	cytosol	52.09	51.46
KRH16939	Soybean	cytosol	38.82	50.32
TraesCS6A01G024000.1	Wheat	cytosol	53.07	50.23
Zm00001d054072_P002	Maize	cytosol	52.83	50.12
VIT_16s0098g00580.t01	Wine grape	cytosol	51.84	48.51
PGSC0003DMT400069227	Potato	cytosol	49.14	47.51
KRH72573	Soybean	cytosol	49.63	46.87
Os02t0106700-01	Rice	cytosol, plastid	55.53	46.5
Solyc06g072970.2.1	Tomato	cytosol	47.91	46.1
HORVU0Hr1G014940.1	Barley	cytosol	42.51	44.7
AT5G24680.1	Thale cress	extracellular	43.24	44.11
CDX88128	Canola	cytosol	42.51	43.36
KRH64260	Soybean	cytosol	32.92	43.23
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	41.52	42.57
CDX80465	Canola	cytosol	41.28	41.69

Protein Annotations

EnsemblPlants:GSMUA_Achr6P36850_001	EnsemblPlants:GSMUA_Achr6T36850_001	EnsemblPlantsGene:GSMUA_Achr6G36850_001	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	ncoils:Coil
PANTHER:PTHR44681	PFAM:PF07910	UniParc:UPI0002968F7F	UniProt:M0TDC5	MapMan:35.2	:

Description

Putative Zinc finger with UFM1-specific peptidase domain protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G36850_001]

Coordinates

chr6:+:34767540..34770630

Molecular Weight (calculated)

45849.3 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.470

Length

407 amino acids

Sequence
(BLAST)

001: MLPSCPFCHI SVPSAELERH ANNHFVEDEL ESDMELAMQI ALAPPSPELM DETTNDRDQY AARSERSPGQ HDSDFNHNLP NSRKVDDQET SLLIGSQIKS
101: PFYNVQGGLM ALIRRCLELE NGNAITIVSG HVDHYQSNES EDIGWGCGWR NIQMLSSHLL GQRPDARDAM FGGSGFVPDI LSLQRWLEVA WKRGFDTYGF
201: DSFGQKIYGS KKWIGTTECA TILRSFGLRA RIVDFDSMTS KQPLNHRNPG CKLAGKQSHG PMDKFLQRTM NEDSQVGPSA FLVDWVWKYF ACEFDSRLDA
301: SKSVLISEKT PLYLQHDGHS RTIVGIQMQK GKCASDHHYS LLVLDPAHRT AALERSLADN NGWQKLIKRG THTLKKPQYQ LCYVDPGIAH GVEMEQLKII
401: DSILVEL

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.