CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72573	Soybean	cytosol	77.71	56.61
KRH53668	Soybean	cytosol	56.69	45.64
TraesCS6B01G032700.1	Wheat	cytosol	53.82	41.02
HORVU6Hr1G004180.9	Barley	nucleus	52.87	40.19
VIT_16s0098g00580.t01	Wine grape	cytosol	55.41	40.0
TraesCS6D01G027400.1	Wheat	cytosol	52.23	39.81
OQU84154	Sorghum	nucleus	52.23	39.71
GSMUA_Achr6P36850_001	Banana	cytosol	50.32	38.82
Zm00001d014950_P002	Maize	cytosol	50.96	38.74
Zm00001d054072_P002	Maize	cytosol	52.87	38.69
TraesCS6A01G024000.1	Wheat	cytosol	51.91	37.91
PGSC0003DMT400069227	Potato	cytosol	50.0	37.29
Solyc06g072970.2.1	Tomato	cytosol	49.04	36.41
KRH64260	Soybean	cytosol	34.08	34.52
CDX88128	Canola	cytosol	43.63	34.34
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	43.31	34.26
AT5G24680.1	Thale cress	extracellular	42.99	33.83
Os02t0106700-01	Rice	cytosol, plastid	50.96	32.92
CDX80465	Canola	cytosol	42.04	32.75
HORVU0Hr1G014940.1	Barley	cytosol	38.53	31.27

Protein Annotations

EMBL:ACUP02009033	EnsemblPlants:KRH16939	EnsemblPlantsGene:GLYMA_14G187200	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
ProteinID:KRH16939	ProteinID:KRH16939.1	UniParc:UPI0006ED9024	UniProt:A0A0R0GQ33	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr14:+:45175997..45178040

Molecular Weight (calculated)

35548.6 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.435

Length

314 amino acids

Sequence
(BLAST)

001: MQLGKSWCGG RNNGEWKMDE KISCLLGLQS RGEFHKVERG LMALLSTCLE SDSENSRSIL SGYVDHFQRI PFEEVGWGCV WRNIQILSSH LLAQRAEPRE
101: AMYGGSGFVP DIPSLQRWLE IAWERGFDAP GADQKSESIY LSVPGSSVGA KELVRINDAR KRKAPNTYGP MEIYLSRAVA QASCCQDAKT CSSFIQIRDT
201: VDKESSDDRV RRVLISHKTP LYFQHDGHSR TIVGIQVKHP RSGIPQYSLL VMDPGHRTAA LERSIREKVG WQKFIKRGVH TLRKLQYQLC YVDPGIASEE
301: MEKLKTIDGV FLEF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.