Factsheet for Solyc06g072970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g079830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	Solyc08g079830.2.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069227	Potato	cytosol	95.04	95.49
VIT_16s0098g00580.t01	Wine grape	cytosol	53.9	52.41
OQU84154	Sorghum	nucleus	49.88	51.09
Zm00001d014950_P002	Maize	cytosol	49.41	50.61
HORVU6Hr1G004180.9	Barley	nucleus	48.94	50.12
KRH16939	Soybean	cytosol	36.41	49.04
TraesCS6D01G027400.1	Wheat	cytosol	47.75	49.03
TraesCS6B01G032700.1	Wheat	cytosol	47.28	48.54
Zm00001d054072_P002	Maize	cytosol	49.17	48.48
GSMUA_Achr6P36850_001	Banana	cytosol	46.1	47.91
KRH53668	Soybean	cytosol	43.74	47.44
TraesCS6A01G024000.1	Wheat	cytosol	47.52	46.74
KRH72573	Soybean	cytosol	46.34	45.48
CDX80465	Canola	cytosol	42.55	44.66
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	41.37	44.08
AT5G24680.1	Thale cress	extracellular	41.37	43.86
CDX88128	Canola	cytosol	41.13	43.61
HORVU0Hr1G014940.1	Barley	cytosol	39.72	43.41
Os02t0106700-01	Rice	cytosol, plastid	49.17	42.8
KRH64260	Soybean	cytosol	30.26	41.29

Protein Annotations

EnsemblPlants:Solyc06g072970.2.1	EnsemblPlantsGene:Solyc06g072970.2	Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910
SEG:seg	UniParc:UPI0002765BBB	UniProt:K4C917	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:-:44972500..44975391

Molecular Weight (calculated)

47781.9 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.478

Length

423 amino acids

Sequence
(BLAST)

001: MADFSACPIC NLRVLTSELE RHANSHFDDE DIDKDFELAQ QIALDLACTP SSPPYIPVDD DMQCETSSRK DRECSILKYE AKNCNHGGKD IDEKARILSS
101: VYLNETRPQI GQGLMDLLKN CLELETEKTT TILCVNVDHF QSSHSEDFGW GCGWRNIQML SSHLLKQRQE AREVLYGGSG FVPDIPSLQR WLEIAWKRGF
201: DKQGSEDFDR AIYGKRNWIG TTECATLFRS FGLRARIVDF VSREIDIRSS GVGKCVGNMT PQVYGPMDGY LSKGKNSVSK AVPISYDVKA KPKVQQALID
301: WVWNYFSDNK SRKYGNHGIL VSQKAPLYFQ HDGHSRTIVG IQMKCQRNGP MQYNLLILDP GHTTESLAKS LKGNFGWQKL IKRGVHTLKK PLYQLCFLDP
401: GIASGEEIES LKNLHSIRVE ASS

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.