Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88128 | Canola | cytosol | 79.2 | 79.2 |
| Bra009788.1-P | Field mustard | cytosol, endoplasmic reticulum | 76.44 | 76.83 |
| CDX80465 | Canola | cytosol | 75.94 | 75.19 |
| KRH53668 | Soybean | cytosol | 47.37 | 48.46 |
| VIT_16s0098g00580.t01 | Wine grape | cytosol | 50.13 | 45.98 |
| KRH72573 | Soybean | cytosol | 48.62 | 45.01 |
| HORVU6Hr1G004180.9 | Barley | nucleus | 46.37 | 44.79 |
| TraesCS6D01G027400.1 | Wheat | cytosol | 46.12 | 44.66 |
| Zm00001d014950_P002 | Maize | cytosol | 45.86 | 44.31 |
| TraesCS6B01G032700.1 | Wheat | cytosol | 45.61 | 44.17 |
| GSMUA_Achr6P36850_001 | Banana | cytosol | 44.11 | 43.24 |
| OQU84154 | Sorghum | nucleus | 44.61 | 43.1 |
| KRH16939 | Soybean | cytosol | 33.83 | 42.99 |
| KRH64260 | Soybean | cytosol | 33.33 | 42.9 |
| Zm00001d054072_P002 | Maize | cytosol | 45.86 | 42.66 |
| TraesCS6A01G024000.1 | Wheat | cytosol | 45.36 | 42.09 |
| PGSC0003DMT400069227 | Potato | cytosol | 44.11 | 41.81 |
| Solyc06g072970.2.1 | Tomato | cytosol | 43.86 | 41.37 |
| HORVU0Hr1G014940.1 | Barley | cytosol | 38.1 | 39.28 |
| Os02t0106700-01 | Rice | cytosol, plastid | 46.12 | 37.86 |
Protein Annotations
| ArrayExpress:AT5G24680 | EMBL:AY065241 | EMBL:AY117299 | EnsemblPlants:AT5G24680.1 | EnsemblPlantsGene:AT5G24680 | EntrezGene:832540 |
| Gene3D:3.90.70.130 | InterPro:Peptidase_C78_UfSP1/2 | PANTHER:PTHR44681 | PFAM:PF07910 | PO:PO:0000293 | ProteinID:AED93349.1 |
| ProteinID:BAB09650.1 | RefSeq:AT5G24680 | RefSeq:AT5G24680-TAIR-G | RefSeq:NP_197856.1 | SEG:seg | TAIR:AT5G24680 |
| TAIR:AT5G24680.1 | Unigene:At.71083 | UniParc:UPI00000A0548 | UniProt:Q9FIR7 | MapMan:35.2 | : |
Description
Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
Coordinates
chr5:+:8453575..8455518
Molecular Weight (calculated)
44317.6 Da
IEP (calculated)
7.587
GRAVY (calculated)
-0.332
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.