Factsheet for VIT_16s0098g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24680.1	VIT_02s0025g04830.t01	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16939	Soybean	cytosol	40.0	55.41
KRH53668	Soybean	cytosol	49.2	54.87
PGSC0003DMT400069227	Potato	cytosol	52.41	54.16
Solyc06g072970.2.1	Tomato	cytosol	52.41	53.9
KRH72573	Soybean	cytosol	53.1	53.6
TraesCS6D01G027400.1	Wheat	cytosol	49.2	51.94
GSMUA_Achr6P36850_001	Banana	cytosol	48.51	51.84
HORVU6Hr1G004180.9	Barley	nucleus	48.97	51.57
Zm00001d014950_P002	Maize	cytosol	48.74	51.33
OQU84154	Sorghum	nucleus	48.74	51.33
TraesCS6B01G032700.1	Wheat	cytosol	48.05	50.73
AT5G24680.1	Thale cress	extracellular	45.98	50.13
Zm00001d054072_P002	Maize	cytosol	48.97	49.65
TraesCS6A01G024000.1	Wheat	cytosol	48.97	49.53
CDX88128	Canola	cytosol	42.99	46.87
CDX80465	Canola	cytosol	42.99	46.4
KRH64260	Soybean	cytosol	32.87	46.13
Bra009788.1-P	Field mustard	cytosol, endoplasmic reticulum	41.61	45.59
HORVU0Hr1G014940.1	Barley	cytosol	39.77	44.7
Os02t0106700-01	Rice	cytosol, plastid	49.89	44.65

Protein Annotations

ArrayExpress:VIT_16s0098g00580	EMBL:FN595247	EnsemblPlants:VIT_16s0098g00580.t01	EnsemblPlantsGene:VIT_16s0098g00580	EntrezGene:100250322	EntrezGene:LOC100250322
Gene3D:3.90.70.130	InterPro:Peptidase_C78_UfSP1/2	PANTHER:PTHR44681	PFAM:PF07910	ProteinID:CCB48117	ProteinID:CCB48117.1
RefSeq:XP_002269574	RefSeq:XP_002269574.1	RefSeq:XP_010662950.1	SEG:seg	UniParc:UPI0002107EB8	UniProt:F6H7B0
wikigene:100250322	wikigene:LOC100250322	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr16:-:21010767..21014176

Molecular Weight (calculated)

49783.8 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.574

Length

435 amino acids

Sequence
(BLAST)

001: MRSSPCPFCR LTFPASQLQR HANDHLEEEE LRRDMEFAQE IAIAPTSPPK TLNNPVEHGM LFETSSRKTY ERSSSRSDES SNCSGEMSID EKVFHLARLQ
101: IRSTFYRVED GLMALLRNCL ESELGNSTCI LSGSVIHFQS IESEDVGWGC GWRNIQMLSS HLVMQRQEAR QVLFGGSGFI PDIPSLQRWL EIAWERDFDT
201: VGSEHFNHKI YGTTNWIGTT ECAALFRSFG LRARIVDFGP KEIKSPYPQK NSRGKRKADE VCGPIDKFLL RREPRDQDIS QPGSSRHDSC NLADSTESDK
301: CFTRNDKGRQ VLVDWVWNYF SDNKFAKSGS NDVIVTDKAP LYFQHDGHSR TIVGIQVKHQ LNGMHQYNLL ILDPTHKTAA LERSLKENVG WQKFIKRGVH
401: TLKKLQYQLC HIDPGIAHAE ELEQLKTLDS IFLEF

Best Arabidopsis Sequence Match ( AT5G24680.1 )
(BLAST)

001: MSALCPVCNL TLPLSLIQSH VNSHFEDDEI NPQIETDHHL ALQLASDDHS SDDPSSSSSA SSSNNVASLV QLQTKSQFYS VGHGGLICLL RNCLESELKL
101: KSKPLECSTS LLSGFVDHFQ SSKEDKGWGC GWKNIQMQCS HLLSHREEAK RVLFGGSNFV PDIPSLQRWL ELAWNKGFDV SGALHFDNRI CGSKRWIGTT
201: ECAALLRSFG LKARIVDFAP EKSKSMYLSV PGSAIAPKVK SYGPMDRYMV KKGGSGKGKA VDSHSSNSSR ISKGAVLMEW VWNYFSDNRL SVSSGVHITN
301: KGPLYFQHEG HSRTIVGVQR RLQGTTFTPQ YNLLILDPAD FTRAIEIALI EKRGWEGYLK RGAHTLKCPE YQMLYVDNGI ADGEELEKLK TIDSHFVEF

Arabidopsis Description

Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Source:UniProtKB/TrEMBL;Acc:Q9FIR7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.