Factsheet for VIT_02s0025g04830.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
peroxisome 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g06040.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	VIT_09s0002g06040.t01	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026069_P001	Maize	cytosol	32.81	79.05
OQU82186	Sorghum	cytosol	70.36	72.36
HORVU2Hr1G094650.1	Barley	extracellular	66.01	69.01
KRH57335	Soybean	plastid	79.05	65.79
PGSC0003DMT400009994	Potato	plastid	74.7	60.58
Solyc08g079830.2.1	Tomato	plastid	74.31	60.45
GSMUA_Achr4P24900_001	Banana	plastid	70.36	59.53
Zm00001d002611_P002	Maize	plastid	70.75	58.12
AT1G12520.1	Thale cress	plastid	72.73	57.5
CDY26568	Canola	plastid	71.54	57.1
Bra016768.1-P	Field mustard	plastid	71.15	56.96
CDY58614	Canola	plastid	71.54	56.92
CDY16008	Canola	plastid	71.54	56.92
CDY21055	Canola	plastid	71.15	56.78
TraesCS2D01G396500.1	Wheat	plastid	69.17	56.63
TraesCS2A01G399000.1	Wheat	plastid	68.77	55.95
TraesCS2B01G417000.1	Wheat	plastid	67.19	55.19
Os04t0573200-01	Rice	plastid	67.19	54.49
CDY39819	Canola	plastid	39.92	46.12
Bra036642.1-P	Field mustard	plastid	39.92	46.12
CDY03250	Canola	plastid	39.53	45.66
Bra026968.1-P	Field mustard	cytosol	71.54	35.91

Protein Annotations

EntrezGene:100263358	wikigene:100263358	Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:AFU52882
ProteinID:AFU52882.1	EMBL:AM435789	ProteinID:CAN76051	ProteinID:CAN76051.1	ProteinID:CBI34786	ProteinID:CBI34786.3
UniProt:D7TWB1	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009987	GO:GO:0016532	GO:GO:0030001	GO:GO:0030234	GO:GO:0043085
GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423	EMBL:JQ692114
EntrezGene:LOC100263358	wikigene:LOC100263358	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003
PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008
TIGR:TC60172	UniParc:UPI00015CCFDA	ArrayExpress:VIT_02s0025g04830	EnsemblPlantsGene:VIT_02s0025g04830	EnsemblPlants:VIT_02s0025g04830.t01	unigene:Vvi.10822
RefSeq:XP_002281850	RefSeq:XP_002281850.1	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4357316..4364272

Molecular Weight (calculated)

26746.7 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.059

Length

253 amino acids

Sequence
(BLAST)

001: MDASSTNHTS SSQNDVVLPE LLTEFMVDMK CEGCVNAVKN KLQTISGVKN VEVDLSNQVV RVLGSSPVKT MADALEQTGR NARLIGQGIP EDFLVSAAVA
101: EFKGPDIFGV VRLAQVNMEL ARIEASFSGL SSGKHGWSIN EFGDLTRGAA STGKVFNPTN KGTDEEPLGD LGTLDVDENG EAFFLGVKQN LRVGVLIGRA
201: VVVYGTEDKS NPGVAAAVIA RSAGVGENYK KICLCDGTTI WESTNSDFVA SKV

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.