Factsheet for VIT_09s0002g06040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0244g00140.t01
VIT_04s0044g00520.t01
VIT_05s0020g01570.t01
VIT_09s0054g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	VIT_05s0020g01570.t01	AT4G15730.1	21798944
AT3G15660.1	VIT_04s0044g00520.t01	AT5G09830.1	21798944
AT3G15660.1	VIT_01s0244g00140.t01	AT5G13280.1	21798944
AT3G15660.1	VIT_09s0054g01880.t01	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g067960.2.1	Tomato	plastid	75.88	75.88
PGSC0003DMT400073383	Potato	mitochondrion	74.71	74.71
KRH47491	Soybean	cytosol, plastid	70.0	73.91
KRH44417	Soybean	cytosol, plastid	69.41	73.29
KRH23549	Soybean	mitochondrion	68.82	72.22
Bra027220.1-P	Field mustard	mitochondrion	71.18	70.76
CDX97692	Canola	mitochondrion	71.18	70.76
CDY21857	Canola	mitochondrion	68.82	70.06
CDY30094	Canola	mitochondrion	67.65	69.7
AT3G15660.1	Thale cress	mitochondrion	68.82	69.23
Bra021125.1-P	Field mustard	mitochondrion	67.65	68.86
CDY20141	Canola	mitochondrion	67.65	68.86
Zm00001d008736_P001	Maize	mitochondrion	51.76	52.69
KXG31737	Sorghum	mitochondrion	56.47	51.89
Os01t0530400-01	Rice	mitochondrion	55.29	50.81
Os01t0174900-01	Rice	mitochondrion	53.53	49.19
GSMUA_Achr10P...	Banana	mitochondrion	52.94	46.88
TraesCS3D01G128900.1	Wheat	mitochondrion	50.0	45.95
TraesCS3A01G127900.1	Wheat	mitochondrion	50.59	45.5
EES12336	Sorghum	mitochondrion	47.65	42.63
Zm00001d025657_P001	Maize	mitochondrion	45.88	40.41
TraesCS3B01G147100.1	Wheat	mitochondrion	50.0	38.64
HORVU3Hr1G023970.2	Barley	cytosol	51.18	33.59
GSMUA_Achr7P08380_001	Banana	plastid	52.35	32.72
VIT_08s0105g00490.t01	Wine grape	plastid	31.18	17.85
VIT_10s0597g00030.t01	Wine grape	cytosol	33.53	11.59

Protein Annotations

EntrezGene:100263408	wikigene:100263408	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CBI36262	ProteinID:CBI36262.3
UniProt:D7U0W6	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0046872	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
EntrezGene:LOC100263408	wikigene:LOC100263408	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	TIGR:TC52198	TIGR:TC52749	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf
UniParc:UPI00015C859F	ArrayExpress:VIT_09s0002g06040	EnsemblPlantsGene:VIT_09s0002g06040	EnsemblPlants:VIT_09s0002g06040.t01	RefSeq:XP_002285351	RefSeq:XP_002285351.1

Description

No Description!

Coordinates

chr9:-:5862879..5867476

Molecular Weight (calculated)

18913.7 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.321

Length

170 amino acids

Sequence
(BLAST)

001: MARSLSNAFL KGISSFPSAR FSTMVSGSIF QNGMRYSTTV PNDPDTHDDF KSTNKLESSG LALQDIVEQD VKDNPVMIYM KGVPDVPRCG FSSLAVRVLK
101: EYNVPLSARN ILEDPELKIA VKKFSHWPTF PQIFIKGEFI GGSDIILNMH QTGELKEKLK DVSAPQEKSE

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.