Factsheet for Solyc06g067960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005240.2.1
Solyc01g067600.2.1
Solyc04g082160.2.1
Solyc08g067140.1.1
Solyc08g067490.1.1
Solyc08g067570.1.1
Solyc08g067590.1.1
Solyc11g005360.1.1
Solyc12g017610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	Solyc01g067600.2.1	AT4G15730.1	21798944
AT3G15660.1	Solyc08g067140.1.1	AT4G15730.1	21798944
AT3G15660.1	Solyc08g067490.1.1	AT4G15730.1	21798944
AT3G15660.1	Solyc08g067570.1.1	AT4G15730.1	21798944
AT3G15660.1	Solyc08g067590.1.1	AT4G15730.1	21798944
AT3G15660.1	Solyc12g017610.1.1	AT4G15730.1	21798944
AT3G15660.1	Solyc11g005360.1.1	AT5G09830.1	21798944
AT3G15660.1	Solyc01g005240.2.1	AT5G13280.1	21798944
AT3G15660.1	Solyc04g082160.2.1	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073383	Potato	mitochondrion	98.82	98.82
VIT_09s0002g06040.t01	Wine grape	mitochondrion	75.88	75.88
KRH44417	Soybean	cytosol, plastid	67.65	71.43
KRH47491	Soybean	cytosol, plastid	67.06	70.81
KRH23549	Soybean	mitochondrion	63.53	66.67
AT3G15660.1	Thale cress	mitochondrion	65.88	66.27
CDY21857	Canola	mitochondrion	64.71	65.87
Bra027220.1-P	Field mustard	mitochondrion	65.29	64.91
CDX97692	Canola	mitochondrion	65.29	64.91
CDY30094	Canola	mitochondrion	62.94	64.85
Bra021125.1-P	Field mustard	mitochondrion	63.53	64.67
CDY20141	Canola	mitochondrion	63.53	64.67
Zm00001d008736_P001	Maize	mitochondrion	50.59	51.5
KXG31737	Sorghum	mitochondrion	54.12	49.73
Os01t0530400-01	Rice	mitochondrion	53.53	49.19
Os01t0174900-01	Rice	mitochondrion	52.35	48.11
TraesCS3A01G127900.1	Wheat	mitochondrion	50.59	45.5
TraesCS3D01G128900.1	Wheat	mitochondrion	49.41	45.41
GSMUA_Achr10P...	Banana	mitochondrion	50.59	44.79
EES12336	Sorghum	mitochondrion	47.65	42.63
Zm00001d025657_P001	Maize	mitochondrion	44.12	38.86
TraesCS3B01G147100.1	Wheat	mitochondrion	49.41	38.18
GSMUA_Achr7P08380_001	Banana	plastid	54.71	34.19
HORVU3Hr1G023970.2	Barley	cytosol	50.59	33.2
Solyc02g082200.2.1	Tomato	plastid	28.82	27.84
Solyc09g005620.2.1	Tomato	plastid	29.41	17.12
Solyc02g078360.2.1	Tomato	cytosol	4.12	2.36

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0046872	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4C7X1	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g067960.2	EnsemblPlants:Solyc06g067960.2.1	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI000276616B

Description

No Description!

Coordinates

chr6:-:42122906..42126507

Molecular Weight (calculated)

19024.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.401

Length

170 amino acids

Sequence
(BLAST)

001: MARSLSQMML KRFAAYPLAR SSAITSRSIH QGEVRYSTSV PSDPDTHEDF RPTSKLESSG LSLENIVEQD VKDNPVMIYM KGVPDLPRCG FSSLAVRVLK
101: EYNAPISARN ILEDPELKNA VKAFSHWPTF PQIFINGEFI GGSDIILNMH QSGELKEKLK TIVNNQGKEE

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.