Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025616 | Potato | plastid | 66.16 | 83.88 |
| CDX95199 | Canola | nucleus | 17.27 | 42.77 |
| KRH06004 | Soybean | nucleus | 46.21 | 42.13 |
| KRH17506 | Soybean | nucleus | 45.74 | 41.88 |
| CDY42355 | Canola | nucleus | 38.74 | 40.59 |
| Bra027974.1-P | Field mustard | nucleus | 38.39 | 40.02 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 40.84 | 37.04 |
| AT5G42220.1 | Thale cress | nucleus | 37.92 | 36.97 |
| CDX95198 | Canola | nucleus | 18.44 | 34.13 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.48 | 30.32 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 33.37 | 27.82 |
| KXG25466 | Sorghum | nucleus | 29.99 | 27.14 |
| Zm00001d052721_P001 | Maize | plasma membrane | 27.89 | 26.41 |
| Os07t0498800-01 | Rice | cytosol | 20.19 | 25.82 |
| Solyc06g036720.2.1 | Tomato | nucleus | 21.0 | 25.5 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 29.05 | 25.41 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 28.82 | 25.36 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 28.59 | 25.28 |
| HORVU6Hr1G002580.6 | Barley | plastid | 28.94 | 23.37 |
Protein Annotations
| EnsemblPlants:Solyc04g082160.2.1 | EnsemblPlantsGene:Solyc04g082160.2 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 |
| PANTHER:PTHR15204:SF5 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000276648A | UniProt:K4BVU3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:+:65936935..65945538
Molecular Weight (calculated)
89406.0 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.353
Length
857 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQQAVEGS STSNDSGGSS ESTVVLNIKT LDSQTYTFNV DKNLQVSALK DKLASQIGVP VEQQRLIFRG KVLKDNHLLS EYYVENGDTL HLVLRQSQLQ
101: APSGGSSGEA TTNNVNRGQE PQPTAGGSRN RIGQISHSVV LGTFNVGDPG EGLVPDLNRV IGAVLNTVGI GNMTGGQLPG VQASTPAPRP QGNESLSQSG
201: SQQSGQAFSG QSLPQVVQIP LGAAIAVPSI NLPLLDSLIT LSEFMDGMEH VFSQNGYPPN QSPNNAGDPP AVQLPTHDRG LSSPEVLSLA LRQAERLFGG
301: QVIAALSHFA GRLEQGRVSS DPALRGQVQT ESVLIGQVMQ HLGALLLELG RTILTLRMGQ SPAESSVNAG PAVYISSTGP NPIMVQPFPL QTSSLFGNSA
401: AVPPNPGTFG ALGIGNAPRH VNIHIHAAPI TSAVGARAAN GDGAHGERGN GTDSGQTRVL PVGNIMATAV APRPAVISVS SMPQPGQSDG PSGQERSTAS
501: GAENDTVSTQ LDETSASGMT VPEPLPAHSV PGREDKMSVG QSSEMSHSKP EASASVGRAQ RSSQELGSPD ESSSVPLGLG LGGLQPKKRT KQSVAHGINA
601: DGSSSSNPNE LPQRDERQFL QSLAALAARG NEPAMPSMTH LDRGVMGTIG SGNRNVDGQS EIADAMSSVL QSPALNGLLS GVSQQTGAGS PDLLRNMMQQ
701: FTQSPAMMNT VSQIAQQIDT QDLGSMFSGQ GGGMDLSRMF QQMMPIVSQA LGGISGVPQR IPNIAQRLGE NTAVRGATPT TENVQIDLHE VAQEIENNSP
801: PVEILRSLVQ STESLHHHGS SDLSLADELS SEENLADEFM QMLRNDVSQR FKDKEGK
101: APSGGSSGEA TTNNVNRGQE PQPTAGGSRN RIGQISHSVV LGTFNVGDPG EGLVPDLNRV IGAVLNTVGI GNMTGGQLPG VQASTPAPRP QGNESLSQSG
201: SQQSGQAFSG QSLPQVVQIP LGAAIAVPSI NLPLLDSLIT LSEFMDGMEH VFSQNGYPPN QSPNNAGDPP AVQLPTHDRG LSSPEVLSLA LRQAERLFGG
301: QVIAALSHFA GRLEQGRVSS DPALRGQVQT ESVLIGQVMQ HLGALLLELG RTILTLRMGQ SPAESSVNAG PAVYISSTGP NPIMVQPFPL QTSSLFGNSA
401: AVPPNPGTFG ALGIGNAPRH VNIHIHAAPI TSAVGARAAN GDGAHGERGN GTDSGQTRVL PVGNIMATAV APRPAVISVS SMPQPGQSDG PSGQERSTAS
501: GAENDTVSTQ LDETSASGMT VPEPLPAHSV PGREDKMSVG QSSEMSHSKP EASASVGRAQ RSSQELGSPD ESSSVPLGLG LGGLQPKKRT KQSVAHGINA
601: DGSSSSNPNE LPQRDERQFL QSLAALAARG NEPAMPSMTH LDRGVMGTIG SGNRNVDGQS EIADAMSSVL QSPALNGLLS GVSQQTGAGS PDLLRNMMQQ
701: FTQSPAMMNT VSQIAQQIDT QDLGSMFSGQ GGGMDLSRMF QQMMPIVSQA LGGISGVPQR IPNIAQRLGE NTAVRGATPT TENVQIDLHE VAQEIENNSP
801: PVEILRSLVQ STESLHHHGS SDLSLADELS SEENLADEFM QMLRNDVSQR FKDKEGK
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.