Factsheet for Solyc07g009320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g103010.2.1
Solyc03g116340.2.1
Solyc06g007710.2.1
Solyc06g082800.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	Solyc01g103010.2.1	AT2G02560.1	21798944
AT2G19080.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT2G19080.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT2G19080.1	Solyc03g116340.2.1	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021961	Potato	cytosol	96.93	96.93
VIT_11s0103g00300.t01	Wine grape	cytosol	69.94	69.94
KRH19062	Soybean	cytosol, nucleus, plasma membrane	58.59	59.69
KRH02821	Soybean	mitochondrion	58.59	59.5
CDY03366	Canola	cytosol, golgi, peroxisome	55.83	57.96
CDX82614	Canola	cytosol	55.52	57.64
Bra038562.1-P	Field mustard	cytosol	55.21	57.32
CDY66507	Canola	cytosol	55.21	57.32
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	55.21	57.14
KRH37302	Soybean	cytosol	57.36	56.84
CDY39135	Canola	cytosol	54.6	56.51
Bra038838.1-P	Field mustard	cytosol	39.88	56.28
KRH12285	Soybean	cytosol	55.83	55.49
OQU75905	Sorghum	cytosol, plastid	55.83	54.01
Os06t0168000-01	Rice	cytosol, peroxisome	56.44	53.18
GSMUA_Achr1P15670_001	Banana	cytosol	47.85	51.83
TraesCS7B01G030900.1	Wheat	plastid	52.15	50.45
TraesCS7A01G130600.1	Wheat	plastid	51.53	49.85
Zm00001d045193_P002	Maize	mitochondrion	55.52	49.05
TraesCS7D01G130000.1	Wheat	plastid	52.15	48.99
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	46.63	47.95

Protein Annotations

MapMan:23.2.2.2	GO:GO:0001401	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005741	GO:GO:0005743	GO:GO:0006626	GO:GO:0006810	GO:GO:0008150
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	InterPro:Glutathione-S-Trfase_C_sf
UniProt:K4CC51	InterPro:Metaxin	InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150
PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	SUPFAM:SSF47616	EnsemblPlantsGene:Solyc07g009320.2	EnsemblPlants:Solyc07g009320.2.1	TMHMM:TMhelix
InterPro:Thioredoxin-like_fold	UniParc:UPI000276B9E1	SEG:seg	:	:	:

Description

Mitochondrial outer membrane import complex protein METAXIN [Source:Projected from Arabidopsis thaliana (AT2G19080) UniProtKB/Swiss-Prot;Acc:O64471]

Coordinates

chr7:-:4363246..4373784

Molecular Weight (calculated)

36747.9 Da

IEP (calculated)

4.802

GRAVY (calculated)

-0.482

Length

326 amino acids

Sequence
(BLAST)

001: MEEANEREKL TLVTRKSCFG LPTSCPNCLP VYVYLKFSAT PFDLDFNLNN PDSDQIPYVE SGTYVAYNNE KGGVIRSLSE DGFVDLDSQV RGIPEWISAK
101: AMVDSWLADA TIYELWVGSD GTSAHKIYYS DLPWPLGKIL YLKQVHVVKQ ILGITKENAE RREEEIYRNA NDAFSALSTR LGEQAYFFEN RPTSLDAVFL
201: GHALFTLYAL PETSVLRSKL LEHDNLVRYT EKYKSELVDS SGSSSSGTHS QSDPSSSVPR RPSQWSSKPK SKPKREKTEE EKKFRRRAKY FLVTQLVAVL
301: VFLSLLGGSD AAEVELDEDD DGADYD

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.